Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   J7U22_RS06680 Genome accession   NZ_CP072428
Coordinates   1292316..1293275 (-) Length   319 a.a.
NCBI ID   WP_011680817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1287316..1298275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U22_RS06665 (J7U22_06645) - 1288407..1289549 (-) 1143 WP_138496532.1 peptidyl-prolyl cis-trans isomerase -
  J7U22_RS06670 (J7U22_06650) - 1289611..1290318 (-) 708 WP_023909440.1 O-methyltransferase -
  J7U22_RS06675 (J7U22_06655) pepF 1290500..1292305 (-) 1806 WP_084831012.1 oligoendopeptidase F Regulator
  J7U22_RS06680 (J7U22_06660) coiA 1292316..1293275 (-) 960 WP_011680817.1 competence protein CoiA Machinery gene
  J7U22_RS06685 (J7U22_06665) - 1294573..1295469 (+) 897 WP_014608039.1 LysR family transcriptional regulator -
  J7U22_RS06690 (J7U22_06670) metG 1295747..1297750 (-) 2004 WP_011226921.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38070.95 Da        Isoelectric Point: 9.1721

>NTDB_id=482192 J7U22_RS06680 WP_011680817.1 1292316..1293275(-) (coiA) [Streptococcus thermophilus strain S24749]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=482192 J7U22_RS06680 WP_011680817.1 1292316..1293275(-) (coiA) [Streptococcus thermophilus strain S24749]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCTACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTGCGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTTTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAAGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAACAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439