Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IC758_RS11775 Genome accession   NZ_CP061361
Coordinates   2446991..2448823 (-) Length   610 a.a.
NCBI ID   WP_227434881.1    Uniprot ID   -
Organism   Clostridioides sp. ES-W-0016-02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441991..2453823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC758_RS11760 (IC758_11725) - 2442721..2444085 (-) 1365 WP_227434878.1 aldehyde dehydrogenase -
  IC758_RS11765 (IC758_11730) - 2444293..2444832 (-) 540 WP_227434879.1 flavodoxin domain-containing protein -
  IC758_RS11770 (IC758_11735) hflX 2445065..2446336 (-) 1272 WP_413927137.1 GTPase HflX -
  IC758_RS11775 (IC758_11740) rcrQ 2446991..2448823 (-) 1833 WP_227434881.1 ABC transporter ATP-binding protein Regulator
  IC758_RS11780 (IC758_11745) - 2448816..2451062 (-) 2247 WP_227830638.1 ABC transporter ATP-binding protein -
  IC758_RS11785 (IC758_11750) - 2451130..2451591 (-) 462 WP_227434883.1 MarR family winged helix-turn-helix transcriptional regulator -
  IC758_RS11790 (IC758_11755) - 2451901..2452467 (-) 567 WP_227434884.1 beta-class carbonic anhydrase -
  IC758_RS21240 - 2452821..2452898 (-) 78 WP_413927138.1 GTP-binding protein -
  IC758_RS11795 (IC758_11760) aroD 2452919..2453686 (-) 768 WP_227434885.1 type I 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 67765.40 Da        Isoelectric Point: 5.6128

>NTDB_id=482090 IC758_RS11775 WP_227434881.1 2446991..2448823(-) (rcrQ) [Clostridioides sp. ES-W-0016-02]
MSRMGKGPMGKSIGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFDAIGKILALLLCLYLVSALFSFIQGFIMSGISQKVSYNLRQEISVKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAILILPISMFVISRIVKKSQKYFRSQQEYLGNVNGQVEETYSGQTI
VKAFNREEEAINEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQVVENAVSIDGLEGKIDFENVNFGYNSNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYNMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=482090 IC758_RS11775 WP_227434881.1 2446991..2448823(-) (rcrQ) [Clostridioides sp. ES-W-0016-02]
ATGAGTAGAATGGGAAAAGGTCCTATGGGAAAATCTATAGGAGCAGGACAAAAAGCAAATGACTTTAAAGGAACCATGCG
AAAACTAATTGCATACTTATCTAAATTTAAAATATCAATAATTTTGGTAATTGTATTTGCTATTGGTAGTGCATCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGTAAGGCGACTACAAAGATATTTGAAGGATTAGTGAGCAAAGTCTCTGGAGGCAAT
GTAGGTATAGATTTTGACGCAATTGGAAAAATTTTAGCATTATTACTTTGCCTTTACTTGGTAAGTGCACTATTCTCTTT
TATACAAGGATTCATAATGAGTGGAATTTCTCAAAAAGTATCTTATAATTTAAGACAAGAGATTTCAGTAAAATTGGATA
GATTGCCAATGAAGTATTTTGACACTAAAACACATGGTGAAATACTATCAAGAATTACAAATGATATAGATACTCTAAAC
CAAAGTTTAAATCAAAGTATGACACAACTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGTATTATGACATTAGTGGCAATTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAGTAAAGAAATCAC
AAAAATACTTTAGATCCCAACAAGAATATTTAGGGAATGTAAATGGTCAAGTTGAGGAAACTTATAGTGGTCAAACAATA
GTAAAAGCATTTAATCGTGAAGAAGAAGCAATTAATGAATTTGATAAATTAAATGATAGTTTGTATAATTCAGCATGGAA
ATCTCAATTTTTATCTGGGATAATGCAACCACTTATGATGTTTATTGGAAACTTAGGCTATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGAGATATACAGTCATTTATACAATATGTAAGAAACTTTACACAA
CCAATGACTCAGATTGCACAGGTTGCTAACTTACTACAGTCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTCTTAGA
AGAGGAAGAAGAAGACCAAGTTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAGATTGATTTTGAAAATGTTA
ATTTTGGATATAATTCAAATAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACTATAGTTAAGCTTTTAATGAGATTTTATGATGTTAATAGTGGTTCAATACTAAT
TGATGGTCATAATATTAAAGATTTCAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGCTCAATTATGGAAAATATAAGATATGGTAAACTAAATGCTACAGATGAAGAAGTTATAGAAGCAGCTAAATCT
GCACATGTTCATAGATTTATCAAAACATTGCCAGATGGATACAACATGAAATTAAATGAAGAAGCAAGCAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCCATTTTAGCAGACCCTAAAATCTTAATATTGGATGAAGCTACAAGTT
CTGTTGATACTAGAACAGAAGTATTAATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGCTTTGTTATAGCA
CATAGATTATCAACTATACGTGATGCTGACATGATTCTTGTTATGAATGAAGGAGATATAGTTGAACAAGGAAACCATGA
GGAACTTCTAAAGAAAGGTGGATTCTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.356

96.721

0.497