Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   IC758_RS03665 Genome accession   NZ_CP061361
Coordinates   702153..702860 (+) Length   235 a.a.
NCBI ID   WP_227824693.1    Uniprot ID   -
Organism   Clostridioides sp. ES-W-0016-02     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 697153..707860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC758_RS03635 (IC758_03625) - 697581..698297 (-) 717 WP_227860762.1 hypothetical protein -
  IC758_RS03640 (IC758_03630) - 698490..698942 (-) 453 WP_255630951.1 GNAT family N-acetyltransferase -
  IC758_RS03645 (IC758_03635) - 699182..699352 (-) 171 WP_227835887.1 hypothetical protein -
  IC758_RS03650 (IC758_03640) - 699535..700272 (-) 738 WP_227860763.1 ABC transporter permease -
  IC758_RS03655 (IC758_03645) - 700284..701045 (-) 762 WP_227433511.1 ABC transporter permease -
  IC758_RS03660 (IC758_03650) - 701045..701959 (-) 915 WP_227433510.1 ABC transporter ATP-binding protein -
  IC758_RS03665 (IC758_03655) scnR 702153..702860 (+) 708 WP_227824693.1 response regulator transcription factor Regulator
  IC758_RS03670 (IC758_03660) - 702900..704306 (+) 1407 WP_227845518.1 sensor histidine kinase -
  IC758_RS03675 (IC758_03665) - 705266..705637 (+) 372 WP_227433507.1 BlaI/MecI/CopY family transcriptional regulator -
  IC758_RS03680 (IC758_03670) - 706169..706636 (+) 468 WP_227834752.1 VOC family protein -
  IC758_RS03685 (IC758_03675) - 706689..707132 (+) 444 WP_227860764.1 DUF3788 family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26715.35 Da        Isoelectric Point: 6.8633

>NTDB_id=482083 IC758_RS03665 WP_227824693.1 702153..702860(+) (scnR) [Clostridioides sp. ES-W-0016-02]
METIKDKKILVVDDHKELLKMIDEILRKDGFNRIFLASSYEEAVKVFKNIKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLIGILNRVYIPMKEEELPVFKLGDFVVVNLNTACVKKDGQEIS
LTAKEHSLLLKLYENKGRIVTSDALCQAIWGDDMYGYENTLMVHVRRVREKIEEAPSSPKHLLTVRGLGYKLIVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=482083 IC758_RS03665 WP_227824693.1 702153..702860(+) (scnR) [Clostridioides sp. ES-W-0016-02]
ATGGAAACAATAAAGGATAAAAAAATACTTGTGGTTGATGACCATAAAGAATTATTAAAAATGATAGATGAAATCTTAAG
AAAAGATGGATTTAATAGAATTTTTCTAGCCTCTAGTTATGAAGAAGCTGTGAAAGTATTTAAAAATATAAAACCAGACT
GTGCAATTTTAGATGTAGTATTGCCAGATGGAGATGGATTTTCTATTATGAGAAAAATTAGAGAGACGTCTAAGATACCA
GTTATTTTTCTTTCTGCAAGAGGAGAGGATGAAGATAGATTGATTGGTTTGGGTTTAGGAGCTGATGATTATATAGTAAA
GCCATTTTTACCTAAAGAACTTACTTTAAGGTTAATAGGTATACTAAATCGTGTATATATTCCTATGAAGGAAGAGGAGT
TGCCAGTATTTAAACTAGGAGATTTTGTTGTCGTAAATTTAAATACTGCATGTGTAAAAAAAGATGGACAAGAAATATCT
TTAACTGCTAAAGAACATTCCCTGCTTTTAAAGTTGTATGAAAATAAAGGGCGAATTGTTACTAGTGATGCACTATGTCA
AGCTATATGGGGAGATGACATGTATGGGTATGAAAATACTCTTATGGTACATGTTAGGAGAGTTAGAGAAAAGATAGAGG
AAGCACCATCTTCTCCTAAGCATCTTCTTACAGTAAGAGGGCTTGGATATAAATTAATTGTTAATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.644

99.149

0.502
  micA Streptococcus pneumoniae Cp1015

39.574

100

0.396
  vicR Streptococcus mutans UA159

38.793

98.723

0.383