Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   IC588_RS07985 Genome accession   NZ_CP061349
Coordinates   1637679..1638176 (-) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MSSA01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632679..1643176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC588_RS07960 (IC588_07960) gcvPB 1632841..1634313 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  IC588_RS07965 (IC588_07965) gcvPA 1634306..1635652 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IC588_RS07970 (IC588_07970) gcvT 1635672..1636763 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  IC588_RS07975 (IC588_07975) - 1636922..1637446 (-) 525 WP_001015123.1 shikimate kinase -
  IC588_RS07980 (IC588_07980) - 1637436..1637582 (-) 147 WP_001789879.1 hypothetical protein -
  IC588_RS07985 (IC588_07985) comGF 1637679..1638176 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  IC588_RS07990 (IC588_07990) comGE 1638094..1638393 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IC588_RS07995 (IC588_07995) comGD 1638380..1638826 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IC588_RS08000 (IC588_08000) comGC 1638804..1639115 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IC588_RS08005 (IC588_08005) comGB 1639129..1640199 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IC588_RS08010 (IC588_08010) comGA 1640171..1641145 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IC588_RS08015 (IC588_08015) - 1641170..1642814 (-) 1645 Protein_1582 IS1182 family transposase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=482032 IC588_RS07985 WP_029642894.1 1637679..1638176(-) (comGF) [Staphylococcus aureus strain MSSA01]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=482032 IC588_RS07985 WP_029642894.1 1637679..1638176(-) (comGF) [Staphylococcus aureus strain MSSA01]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976