Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   AT6N2_RS07455 Genome accession   NZ_CP072308
Coordinates   1488633..1489310 (+) Length   225 a.a.
NCBI ID   WP_209085202.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain 6N2     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483633..1494310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT6N2_RS07435 (AT6N2_C1867) - 1484808..1486652 (+) 1845 WP_144575767.1 tetratricopeptide repeat protein -
  AT6N2_RS07440 (AT6N2_C1868) - 1486659..1487543 (+) 885 WP_209085190.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase -
  AT6N2_RS07445 (AT6N2_C1869) moaB 1487570..1488121 (+) 552 WP_209085192.1 molybdenum cofactor biosynthesis protein B -
  AT6N2_RS07450 (AT6N2_C1870) - 1488165..1488434 (-) 270 WP_063949772.1 hypothetical protein -
  AT6N2_RS07455 (AT6N2_C1872) ciaR 1488633..1489310 (+) 678 WP_209085202.1 response regulator transcription factor Regulator
  AT6N2_RS07460 (AT6N2_C1873) - 1489297..1490649 (+) 1353 WP_209085204.1 ATP-binding protein -
  AT6N2_RS07465 (AT6N2_C1875) adhP 1490699..1491727 (-) 1029 WP_063949769.1 alcohol dehydrogenase AdhP -
  AT6N2_RS07470 (AT6N2_C1876) - 1491878..1492279 (-) 402 WP_063949768.1 MAPEG family protein -
  AT6N2_RS07475 (AT6N2_C1878) guaB 1492392..1493897 (-) 1506 WP_209085221.1 IMP dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25116.10 Da        Isoelectric Point: 9.3616

>NTDB_id=481853 AT6N2_RS07455 WP_209085202.1 1488633..1489310(+) (ciaR) [Agrobacterium tumefaciens strain 6N2]
MKILLVEDDITTGNYIIKGLASAGHTVDWVKDGREALAAGLDGGYDVAVVDRMIPGLDGLNLVKSMRAASIRVPILFLTA
MSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVRRPPIATEKTRLRVGDLEMDLVTRTTSRAGQRIDLLPREFSLLE
LLMRNEGRILTKTMFLEKIWNFNFDPQSSVVETHISRLRAKIDKPFNQPLLHTVKNTGYTLHARR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=481853 AT6N2_RS07455 WP_209085202.1 1488633..1489310(+) (ciaR) [Agrobacterium tumefaciens strain 6N2]
ATGAAGATACTTCTTGTAGAAGACGACATCACAACGGGAAACTATATTATCAAGGGACTGGCCTCTGCCGGCCACACGGT
CGACTGGGTGAAGGACGGGCGCGAGGCGCTGGCGGCCGGCCTCGACGGCGGATACGACGTCGCCGTCGTGGACCGCATGA
TCCCCGGCCTCGACGGCCTCAATCTGGTCAAGAGCATGCGCGCGGCCTCGATACGCGTCCCCATCCTTTTTCTCACCGCA
ATGAGCGGTGTTGACGACCGTGTCGAAGGGCTGGAAGCGGGGGGTGACGATTATCTGGTCAAGCCCTTCGCTTTTTCGGA
ACTGACGGCGAGAATCAATGCGCTCGTTCGGCGCCCGCCTATTGCCACGGAGAAGACGCGCCTGCGCGTCGGCGACCTGG
AGATGGACCTCGTCACCAGAACGACATCGCGTGCAGGGCAGCGGATCGACCTGCTGCCACGTGAATTTTCGCTTCTCGAA
CTGCTCATGCGCAACGAGGGCAGAATCCTGACGAAAACGATGTTTCTCGAAAAAATCTGGAACTTCAATTTCGATCCGCA
AAGCTCGGTCGTGGAAACGCATATCAGCCGGCTGAGGGCGAAAATCGACAAACCCTTCAATCAGCCGCTTCTGCACACGG
TCAAAAACACGGGCTATACGCTTCATGCCCGGCGCTAG

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(3-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

38.739

98.667

0.382
  ciaR Streptococcus pneumoniae Rx1

36.652

98.222

0.36
  ciaR Streptococcus pneumoniae D39

36.652

98.222

0.36
  ciaR Streptococcus pneumoniae R6

36.652

98.222

0.36
  ciaR Streptococcus pneumoniae TIGR4

36.652

98.222

0.36