Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ICJ61_RS12870 Genome accession   NZ_CP061284
Coordinates   2497332..2497667 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus halotolerans strain XH-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2492332..2502667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICJ61_RS12850 (ICJ61_12850) gcvT 2492919..2494007 (-) 1089 WP_188323131.1 glycine cleavage system aminomethyltransferase GcvT -
  ICJ61_RS12855 (ICJ61_12855) - 2494451..2496124 (+) 1674 WP_127696774.1 DEAD/DEAH box helicase -
  ICJ61_RS12860 (ICJ61_12860) - 2496144..2496938 (+) 795 WP_127696773.1 YqhG family protein -
  ICJ61_RS12865 (ICJ61_12865) sinI 2497122..2497298 (+) 177 WP_188323132.1 anti-repressor SinI Regulator
  ICJ61_RS12870 (ICJ61_12870) sinR 2497332..2497667 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ICJ61_RS12875 (ICJ61_12875) tasA 2497754..2498539 (-) 786 WP_106020091.1 biofilm matrix protein TasA -
  ICJ61_RS12880 (ICJ61_12880) sipW 2498604..2499188 (-) 585 WP_105955579.1 signal peptidase I SipW -
  ICJ61_RS12885 (ICJ61_12885) tapA 2499160..2499921 (-) 762 WP_106020093.1 amyloid fiber anchoring/assembly protein TapA -
  ICJ61_RS12890 (ICJ61_12890) - 2500189..2500512 (+) 324 WP_101864527.1 YqzG/YhdC family protein -
  ICJ61_RS12895 (ICJ61_12895) - 2500555..2500734 (-) 180 WP_003236949.1 YqzE family protein -
  ICJ61_RS12900 (ICJ61_12900) comGG 2500806..2501180 (-) 375 WP_188323133.1 competence type IV pilus minor pilin ComGG Machinery gene
  ICJ61_RS12905 (ICJ61_12905) comGF 2501181..2501600 (-) 420 WP_316961080.1 competence type IV pilus minor pilin ComGF Machinery gene
  ICJ61_RS12910 (ICJ61_12910) comGE 2501590..2501937 (-) 348 WP_151175142.1 competence type IV pilus minor pilin ComGE Machinery gene
  ICJ61_RS12915 (ICJ61_12915) comGD 2501921..2502352 (-) 432 WP_151175143.1 competence type IV pilus minor pilin ComGD Machinery gene
  ICJ61_RS12920 (ICJ61_12920) comGC 2502342..2502638 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=481527 ICJ61_RS12870 WP_003226345.1 2497332..2497667(+) (sinR) [Bacillus halotolerans strain XH-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=481527 ICJ61_RS12870 WP_003226345.1 2497332..2497667(+) (sinR) [Bacillus halotolerans strain XH-1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCAGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCTGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1