Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J6342_RS07945 Genome accession   NZ_CP072196
Coordinates   1677439..1679229 (-) Length   596 a.a.
NCBI ID   WP_014937513.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190604J2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672439..1684229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6342_RS07925 (J6342_07925) - 1672636..1673634 (-) 999 WP_014937517.1 aminoglycoside phosphotransferase family protein -
  J6342_RS07930 (J6342_07930) lnt 1673669..1675312 (-) 1644 WP_014937516.1 apolipoprotein N-acyltransferase -
  J6342_RS07935 (J6342_07935) - 1675370..1675783 (+) 414 WP_038693541.1 VanZ family protein -
  J6342_RS07940 (J6342_07940) - 1675773..1677398 (-) 1626 WP_158454208.1 T9SS type A sorting domain-containing protein -
  J6342_RS07945 (J6342_07945) uvrC 1677439..1679229 (-) 1791 WP_014937513.1 excinuclease ABC subunit UvrC Machinery gene
  J6342_RS07950 (J6342_07950) - 1679249..1680238 (-) 990 WP_014937512.1 cation diffusion facilitator family transporter -
  J6342_RS07955 (J6342_07955) coaE 1680252..1680842 (-) 591 WP_014937511.1 dephospho-CoA kinase -
  J6342_RS07960 (J6342_07960) - 1680858..1681724 (-) 867 WP_014937510.1 MBL fold metallo-hydrolase -
  J6342_RS07965 (J6342_07965) ruvB 1681762..1682784 (-) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  J6342_RS07970 (J6342_07970) - 1682948..1683454 (-) 507 WP_220375459.1 ferritin -
  J6342_RS07975 (J6342_07975) - 1683534..1684046 (-) 513 WP_014937507.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69231.02 Da        Isoelectric Point: 9.0407

>NTDB_id=481127 J6342_RS07945 WP_014937513.1 1677439..1679229(-) (uvrC) [Riemerella anatipestifer strain 20190604J2-1]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTRIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPARVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGEPLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGMKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=481127 J6342_RS07945 WP_014937513.1 1677439..1679229(-) (uvrC) [Riemerella anatipestifer strain 20190604J2-1]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGCTACTATGACGAAGCGGGACA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAAAAACAGAGTGCTATCCTACTTCAATAAAAGTCAAGTGGGTTACAAGA
CTAGAATTATGGTTAAAAAAATCCACCGCTTAGAGATTACTATAGTTCCCAGCGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGTTGTGCATCAAAAA
TGAACCATTCCCTAGGCTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCCGCTAGAGTACTTTTAGAAACCATTAAAAACCTCTATAAAATAAGGACTTGTACGCTTAATCTTTCTGAAGACAGG
ATAGAGAAAGCCAATTATAAAGTCTGTCTAGAATACCATATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTAGAAAGCGA
GGAAGATTACGAAAAGAAAATCAATGCTGTGAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAGTTGGAGTTTTTGGAAGAT
TATCAGGTTAAACACACTGTGGTTAATCCTAGTATAGATGATGTAGATGTTTTTGGTATGGTGAGTGATGAAACGGCGGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATTGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAGGAGATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAGTTTCAATCCGAATCTAAGGAAATATTACTGCCG
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCGAAAGTGGGAGACAAAAAGAGAATTGTAGAACTCTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCAGACCGCCATACCAATCGCA
TTATGGCAGAGATGAAAACGCTCCTTAGACTTCCAGAAGAACCAAGACACATTGAGGGGTTTGACAATTCTAATATCCAA
GGGACTAACCCTGTGTCTGCCTGTGTTGTATTTAAAGACGGTAAACCAAGCAAGAAGGACTATCGTATTTTCCACATCAA
AACCGTAGAAGGTCCTAACGACTTCGCTTCTATGGAAGAAGTGATTTACCGAAGGTACAAAAGATATTTAGATGAAGGCG
AGCCTCTACCTCAACTGATATTGATAGACGGCGGTAAGGGACAACTGAGTTCTGCCGTTAAAAGTTTGAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCTAAAAGGTTAGAAGAGCTATTTTTCCCTAACGACCCCATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAATGAAGCACCACC
GCACCAGAAGAACCAACAGCACCATAAAATCAGAATTGGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACCTTAGAGGAAATTTTAGGTAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369