Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   J6342_RS07965 Genome accession   NZ_CP072196
Coordinates   1681762..1682784 (-) Length   340 a.a.
NCBI ID   WP_014937509.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20190604J2-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1676762..1687784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6342_RS07945 (J6342_07945) uvrC 1677439..1679229 (-) 1791 WP_014937513.1 excinuclease ABC subunit UvrC Machinery gene
  J6342_RS07950 (J6342_07950) - 1679249..1680238 (-) 990 WP_014937512.1 cation diffusion facilitator family transporter -
  J6342_RS07955 (J6342_07955) coaE 1680252..1680842 (-) 591 WP_014937511.1 dephospho-CoA kinase -
  J6342_RS07960 (J6342_07960) - 1680858..1681724 (-) 867 WP_014937510.1 MBL fold metallo-hydrolase -
  J6342_RS07965 (J6342_07965) ruvB 1681762..1682784 (-) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  J6342_RS07970 (J6342_07970) - 1682948..1683454 (-) 507 WP_220375459.1 ferritin -
  J6342_RS07975 (J6342_07975) - 1683534..1684046 (-) 513 WP_014937507.1 NUDIX domain-containing protein -
  J6342_RS07980 (J6342_07980) xerD 1684051..1684962 (-) 912 WP_014937506.1 site-specific tyrosine recombinase XerD -
  J6342_RS07985 (J6342_07985) - 1684963..1685394 (-) 432 WP_004916535.1 dCMP deaminase family protein -
  J6342_RS07990 (J6342_07990) - 1685420..1686184 (-) 765 WP_014937505.1 enoyl-CoA hydratase/isomerase family protein -
  J6342_RS07995 (J6342_07995) - 1686196..1687344 (-) 1149 WP_014937504.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38059.70 Da        Isoelectric Point: 5.0754

>NTDB_id=481128 J6342_RS07965 WP_014937509.1 1681762..1682784(-) (ruvB) [Riemerella anatipestifer strain 20190604J2-1]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNINRTKNMGELF

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=481128 J6342_RS07965 WP_014937509.1 1681762..1682784(-) (ruvB) [Riemerella anatipestifer strain 20190604J2-1]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
GTTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTCTGCACGGTCCTCCAGGGTTAGGAAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGG
GTGGGTTTTAAAGTAACCTCTGGTCCTGTCTTAGACAAACCTGGAAGTTTAGCTGGACTTCTTACCAATTTAGAAGAAAA
TGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTATCTCTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTAGAAACAGGACCTAATGCTCGTTCAGTGCAAATCAATCTTAATCCATTTACTTTAGTTGGAGCT
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCTAGATTCGGGATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGCACTCCTAGAATTGCGAATGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGT
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATTATGAGAGTAATGATAGAGAACTTCAAAGGTAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAATAGAACTAAAAATATGGGAGAGCTTTTCTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-329)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae R6

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae D39

57.143

92.647

0.529
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.508

92.647

0.524
  ruvB Synechocystis sp. PCC 6803

47.447

97.941

0.465
  ruvB Helicobacter pylori 26695

47.937

92.647

0.444