NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	H9N25_RS21630	Genome accession	NZ_CP061171
Coordinates	5243886..5245262 (-)	Length	458 a.a.
NCBI ID	WP_190327201.1	Uniprot ID	-
Organism	Pedobacter riviphilus strain SW-16
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5238886..5250262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H9N25_RS21610 (H9N25_21610)	-	5239317..5240606 (-)	1290	WP_190327199.1	voltage-gated chloride channel family protein	-
H9N25_RS21615 (H9N25_21615)	-	5240753..5241718 (+)	966	WP_190327200.1	tryptophan 2,3-dioxygenase family protein	-
H9N25_RS21620 (H9N25_21620)	-	5241864..5242928 (+)	1065	WP_167296149.1	branched-chain amino acid aminotransferase	-
H9N25_RS21625 (H9N25_21625)	-	5243097..5243561 (-)	465	WP_169502631.1	DUF4920 domain-containing protein	-
H9N25_RS21630 (H9N25_21630)	radA	5243886..5245262 (-)	1377	WP_190327201.1	DNA repair protein RadA	Machinery gene
H9N25_RS21635 (H9N25_21635)	-	5245659..5247209 (-)	1551	WP_167296152.1	Rne/Rng family ribonuclease	-
H9N25_RS21640 (H9N25_21640)	-	5247488..5248366 (-)	879	WP_167296153.1	M48 family metallopeptidase	-
H9N25_RS21645 (H9N25_21645)	-	5248376..5248678 (-)	303	WP_025143406.1	HU family DNA-binding protein	-
H9N25_RS21650 (H9N25_21650)	mutY	5248849..5249910 (+)	1062	WP_190327202.1	A/G-specific adenine glycosylase	-

Sequence

Protein

Download Length: 458 a.a. Molecular weight: 50212.65 Da Isoelectric Point: 5.9827

                                >NTDB_id=481128 H9N25_RS21630 WP_190327201.1 5243886..5245262(-) (radA) [Pedobacter riviphilus strain SW-16]

MAKSKSAFFCQSCGYESAKWLGKCPSCNQWNTFVEEIVEKSPASVPTWKTDNTSRKLSKPSKVDEIQSSTERRILTGDKE

LDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNLKGKKLLYISGEESEQQIKMRAERIKESPSSDCYILTETSTQNIF

KQVEILEPEILVVDSIQTLHSAHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQF

EGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAIAATLEGARPMLIETQALVSSAAY

GTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAILIAIISSHQDIPVSSKNCFAAEVGLS

GEIRAVNRIEQRIAEADKLGFETIYISKYNLKGIATEKYNLEIKAVSKIEEVFGLVFG

Nucleotide

Download Length: 1377 bp

                                >NTDB_id=481128 H9N25_RS21630 WP_190327201.1 5243886..5245262(-) (radA) [Pedobacter riviphilus strain SW-16]

TTGGCAAAATCGAAAAGTGCATTTTTCTGTCAGAGCTGCGGCTACGAATCGGCAAAATGGTTGGGTAAATGTCCATCATG

TAACCAATGGAATACCTTTGTTGAAGAGATCGTAGAGAAAAGCCCGGCATCGGTACCTACCTGGAAAACCGACAATACCA

GCCGAAAGCTTAGCAAACCGAGTAAGGTAGACGAGATTCAATCATCAACAGAACGTAGAATACTAACTGGCGATAAAGAG

CTCGATCGCGTATTGGGCGGTGGACTGGTAGAAGGTTCGCTTGTTTTAATTGGTGGCGAACCGGGCATCGGCAAATCGAC

CTTAATGCTGCAACTGGCTTTAAATTTAAAAGGCAAAAAGCTGCTCTATATCTCTGGTGAAGAAAGCGAACAACAGATTA

AAATGCGGGCCGAACGGATTAAAGAAAGTCCATCATCTGATTGCTATATCCTAACTGAGACTTCGACCCAGAATATTTTT

AAGCAGGTCGAGATCCTTGAGCCTGAAATCCTGGTGGTTGATTCGATTCAAACATTGCACTCCGCACATATCGATTCAAC

GCCTGGCAGCGTATCGCAGGTAAGGGAATGTACCGCAGAACTATTACGTTTTGCAAAAGAAACCGGTGTGCCGGTTTTTT

TAATTGGCCATATCACTAAAGATGGTGCTATTGCAGGGCCTAAAATACTCGAGCACATGGTTGATACGGTTTTGCAATTT

GAAGGCGACAGGCACCATGTTTATCGCATTTTAAGATCTATCAAAAATCGATTTGGTGCAGCAGCAGAATTGGGTATCTA

CGAAATGCAAGGCAGTGGCTTAAGAGAAGTTTCCAATCCTTCTGAAATCTTGTTATCACAGCGAGACGAAGAGTTGAGCG

GAATTGCTATAGCTGCCACTTTAGAAGGCGCCAGGCCGATGTTAATCGAAACACAAGCCTTGGTAAGCTCAGCTGCATAT

GGCACCCCTCAGCGCTCTGCAACAGGCTTTGATACCAAGAGAATGAATATGCTCTTAGCTGTTTTAGAAAAACGTTGCGG

CTTTCGGTTAAGTACGCAAGATGTTTTCTTAAATATCGCCGGTGGAATTAGAGTTGAAGATCCTGCGATTGACCTGGCTA

TATTAATTGCCATTATATCATCGCATCAGGATATCCCAGTGTCTTCAAAAAATTGTTTTGCTGCAGAGGTAGGTCTATCT

GGAGAAATAAGAGCAGTAAACAGAATCGAACAACGCATTGCTGAAGCAGATAAATTGGGTTTCGAAACCATTTACATCTC

TAAATACAATTTGAAAGGCATTGCAACAGAAAAATACAACCTTGAGATTAAAGCAGTGAGTAAAATAGAAGAAGTATTCG

GTCTTGTTTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(65-222)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.495	100	0.528
radA	Streptococcus mitis NCTC 12261	50.655	100	0.507
radA	Streptococcus mitis SK321	50.655	100	0.507
radA	Streptococcus pneumoniae Rx1	50.655	100	0.507
radA	Streptococcus pneumoniae D39	50.655	100	0.507
radA	Streptococcus pneumoniae R6	50.655	100	0.507
radA	Streptococcus pneumoniae TIGR4	50.655	100	0.507

Detailed information NTG0481128