Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NMBM01240355_RS03865 Genome accession   NC_017517
Coordinates   766249..767052 (-) Length   267 a.a.
NCBI ID   WP_002217677.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240355     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 761249..772052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240355_RS03855 (NMBM01240355_0700) - 762470..763477 (-) 1008 WP_014581761.1 IS5 family transposase -
  NMBM01240355_RS03860 (NMBM01240355_0701) comA 763972..766191 (+) 2220 WP_153063436.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NMBM01240355_RS03865 (NMBM01240355_0702) comL 766249..767052 (-) 804 WP_002217677.1 outer membrane protein assembly factor BamD Machinery gene
  NMBM01240355_RS03870 (NMBM01240355_0703) rluD 767051..768175 (+) 1125 WP_014581870.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NMBM01240355_RS03875 (NMBM01240355_0704) - 768328..769275 (-) 948 WP_002219577.1 bile acid:sodium symporter family protein -
  NMBM01240355_RS03880 (NMBM01240355_0705) pgeF 769834..770613 (+) 780 WP_002233699.1 peptidoglycan editing factor PgeF -
  NMBM01240355_RS03885 (NMBM01240355_0706) lptE 770665..771144 (+) 480 WP_002214127.1 LPS assembly lipoprotein LptE -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30790.80 Da        Isoelectric Point: 8.9351

>NTDB_id=48099 NMBM01240355_RS03865 WP_002217677.1 766249..767052(-) (comL) [Neisseria meningitidis M01-240355]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEISVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=48099 NMBM01240355_RS03865 WP_002217677.1 766249..767052(-) (comL) [Neisseria meningitidis M01-240355]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAGCTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCGCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAAGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTTCACCCGCAACACCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATATCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment