Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   SPN994038_RS09775 Genome accession   NC_021026
Coordinates   1805939..1807921 (-) Length   660 a.a.
NCBI ID   WP_000067855.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN994038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800939..1812921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994038_RS09755 (SPN994038_17760) adhE 1801691..1804342 (-) 2652 WP_000763967.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  SPN994038_RS09760 (SPN994038_17770) - 1804642..1805052 (-) 411 WP_000429499.1 MORN repeat-containing protein -
  SPN994038_RS09765 (SPN994038_17780) - 1805054..1805482 (-) 429 WP_000737441.1 low molecular weight protein-tyrosine-phosphatase -
  SPN994038_RS09770 (SPN994038_17790) yajC 1805529..1805828 (-) 300 WP_001069051.1 preprotein translocase subunit YajC -
  SPN994038_RS09775 (SPN994038_17800) recP/tkt 1805939..1807921 (-) 1983 WP_000067855.1 transketolase Machinery gene
  SPN994038_RS09780 (SPN994038_17810) ulaG 1808035..1809126 (-) 1092 WP_001134220.1 L-ascorbate 6-phosphate lactonase -
  SPN994038_RS09785 (SPN994038_17820) - 1809238..1810911 (-) 1674 WP_001809382.1 BglG family transcription antiterminator -
  SPN994038_RS09790 (SPN994038_17830) - 1811088..1811792 (-) 705 WP_001077549.1 L-ribulose-5-phosphate 4-epimerase -
  SPN994038_RS09795 (SPN994038_17840) - 1811794..1812657 (-) 864 WP_000252144.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 71312.94 Da        Isoelectric Point: 4.8959

>NTDB_id=48094 SPN994038_RS09775 WP_000067855.1 1805939..1807921(-) (recP/tkt) [Streptococcus pneumoniae SPN994038]
MSNLSVNAIRFLGIDAINKANSGHPGVVMGAAPMAYSLFTKQLHINPAQPNWINRDRFILSAGHGSMLLYALLHLSGFED
VSMDEIKSFRQWGSKTPGHPEFGHTAGIDATTGPLGQGISTATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLVVLYDSNDINLDGETKDSFTESVRDRYNAYGWHTALVENGTDLEAIHAAIETAKASGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGADETASTRQALGWDYEPFEIPEQVYADFKEHVADRGASAYQAWTKLVADYKEAHPE
LAAEVEAIIDGRDPVEVTPADFPALENGFSQATRNSSQDALNVVAAKLPTFLGGSADLAHSNMTYIKTDGLQDDTNRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
AMPNLNVFRPADARETQAAWYLAVTSEKTPTALVLTRQNLTVEDGTDFDKVAKGAYVVYENAADFDTILIATGSEVNLAV
AAAKELASKGEKVRVVSMPSTDVFDKQDAAYKEEILPNAVRRRVAVEMGASQNWYKYVGLDGAVLGIDTFGASAPAPKVL
AEYGFTVENLVKVVRNLKQS

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=48094 SPN994038_RS09775 WP_000067855.1 1805939..1807921(-) (recP/tkt) [Streptococcus pneumoniae SPN994038]
ATGTCAAATCTATCTGTTAATGCAATTCGTTTTCTAGGTATTGACGCCATTAATAAAGCCAACTCAGGTCATCCAGGTGT
GGTTATGGGAGCGGCTCCGATGGCTTACAGCCTCTTTACAAAACAACTTCATATCAATCCAGCTCAACCAAACTGGATTA
ACCGCGACCGCTTTATTCTTTCAGCAGGTCATGGTTCAATGCTCCTTTATGCTCTTCTTCACCTTTCTGGTTTTGAAGAT
GTCAGCATGGATGAGATTAAGAGCTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCATACGGCAGG
GATTGATGCTACGACAGGTCCTCTAGGGCAAGGGATTTCAACTGCTACTGGTTTTGCCCAAGCAGAACGTTTCTTGGCAG
CCAAATATAACCGTGAAGGCTACAATATCTTTGACCACTATACTTACGTTATCTGTGGAGACGGAGACTTGATGGAAGGT
GTCTCAAGCGAGGCAGCTTCATACGCAGGCTTGCAAAAACTTGATAAGTTGGTTGTTCTTTATGATTCAAATGATATCAA
CTTGGATGGTGAGACAAAGGATTCCTTTACAGAAAGTGTTCGTGACCGTTACAATGCCTACGGTTGGCATACTGCCTTGG
TTGAAAATGGAACAGACTTGGAAGCCATCCATGCTGCTATCGAAACAGCAAAAGCTTCAGGCAAGCCATCTTTGATTGAA
GTGAAGACGGTTATTGGATACGGTTCTCCAAACAAACAAGGAACTAATGCTGTACACGGCGCCCCTCTTGGAGCAGATGA
AACTGCATCAACTCGCCAAGCCCTCGGTTGGGACTACGAACCATTTGAAATTCCAGAACAAGTATATGCTGATTTCAAAG
AACATGTTGCAGACCGTGGCGCATCAGCTTATCAAGCTTGGACTAAATTAGTTGCAGATTATAAAGAAGCTCATCCAGAA
CTGGCTGCAGAAGTAGAGGCCATCATCGACGGACGTGATCCAGTCGAAGTGACTCCAGCAGACTTCCCAGCTTTAGAAAA
TGGTTTTTCTCAAGCAACTCGTAATTCAAGTCAAGATGCCTTGAATGTTGTGGCAGCTAAATTACCAACCTTCCTAGGTG
GATCAGCTGACCTTGCTCACTCAAACATGACTTATATCAAGACGGATGGACTTCAAGACGATACCAATCGCTTGAATCGT
AACATTCAGTTTGGTGTTCGTGAATTTGCAATGGGAACAATCTTGAACGGGATGGCCCTTCATGGTGGACTTCGTGTATA
CGGTGGAACTTTCTTCGTCTTCTCTGACTATGTGAAGGCAGCTGTCCGCTTGTCAGCCTTACAAGGACTTCCTGTGACTT
ATGTCTTTACCCATGATTCAATCGCAGTTGGGGAAGATGGTCCGACTCACGAACCAGTTGAGCATTTAGCAGGTCTTCGT
GCTATGCCAAATCTAAATGTTTTCCGTCCAGCAGATGCGCGTGAAACGCAAGCAGCTTGGTACCTTGCAGTGACAAGTGA
GAAAACACCAACTGCCCTTGTCTTGACACGTCAAAACTTGACTGTTGAAGATGGAACAGACTTCGACAAGGTTGCTAAAG
GTGCTTATGTTGTATATGAAAATGCAGCCGACTTTGATACCATCTTGATTGCGACAGGTTCAGAGGTCAATCTAGCTGTC
GCAGCTGCCAAAGAATTAGCTAGTAAAGGCGAAAAAGTCCGCGTAGTCAGCATGCCATCTACAGATGTCTTTGATAAACA
AGATGCAGCTTACAAGGAAGAGATTCTTCCAAATGCAGTCCGCCGTCGTGTTGCAGTCGAAATGGGTGCAAGTCAAAACT
GGTACAAATATGTTGGTCTCGATGGTGCCGTTCTAGGTATTGATACCTTCGGAGCCTCTGCCCCAGCACCAAAAGTATTG
GCAGAATATGGCTTTACTGTAGAAAATCTTGTAAAAGTTGTTCGAAACTTGAAACAATCCTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(544-649)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.452

99.545

0.791

Multiple sequence alignment