Detailed information NTG0048091

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMBM01240355_RS01900
• Genome accession: NC_017517
• Coordinates: 356061..356921 (-)
• Length: 286 a.a.
• NCBI ID: WP_014581768.1
• Uniprot ID: -
• Organism: Neisseria meningitidis M01-240355
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 351061..361921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMBM01240355_RS01870 (NMBM01240355_0336)	ispB	351550..352524 (+)	975	WP_002235439.1	octaprenyl diphosphate synthase	-
NMBM01240355_RS01875 (NMBM01240355_0337)	-	352528..352974 (+)	447	WP_014581766.1	DUF441 domain-containing protein	-
NMBM01240355_RS01885 (NMBM01240355_0339)	pilF	353464..355140 (+)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NMBM01240355_RS01890 (NMBM01240355_0340)	-	355225..355434 (-)	210	WP_002216401.1	DNA gyrase inhibitor YacG	-
NMBM01240355_RS01895 (NMBM01240355_0341)	coaE	355427..356059 (-)	633	WP_014581767.1	dephospho-CoA kinase	-
NMBM01240355_RS01900 (NMBM01240355_0342)	pilD	356061..356921 (-)	861	WP_014581768.1	A24 family peptidase	Machinery gene
NMBM01240355_RS01905 (NMBM01240355_0343)	pilG	356995..358227 (-)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
NMBM01240355_RS01910 (NMBM01240355_0344)	pgi	358737..360320 (+)	1584	WP_014581769.1	glucose-6-phosphate isomerase	-
NMBM01240355_RS12105	-	360290..360520 (+)	231	WP_025462714.1	hypothetical protein	-
NMBM01240355_RS01915 (NMBM01240355_0345)	dapD	360530..361351 (+)	822	WP_002226039.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31418.47 Da
• Isoelectric Point: 8.7034

>NTDB_id=48091 NMBM01240355_RS01900 WP_014581768.1 356061..356921(-) (pilD) [Neisseria meningitidis M01-240355]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLLTRKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=48091 NMBM01240355_RS01900 WP_014581768.1 356061..356921(-) (pilD) [Neisseria meningitidis M01-240355]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGAAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGTCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACCTTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTCTTATGTGCAGTGTATAAACTGCTCACAAGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	97.193	99.65	0.969
pilD	Vibrio cholerae strain A1552	45.139	100	0.455
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434