Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   IB937_RS08470 Genome accession   NZ_CP061132
Coordinates   1652634..1653185 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain BSAC_bs1388 isolate Invasive disease     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1647634..1658185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB937_RS08435 (IB937_08435) rsfS 1648215..1648568 (-) 354 WP_003049699.1 ribosome silencing factor -
  IB937_RS08440 (IB937_08440) - 1648570..1648830 (-) 261 WP_011528257.1 isochorismatase family protein -
  IB937_RS08445 (IB937_08445) yqeK 1648806..1649399 (-) 594 WP_003055753.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IB937_RS08450 (IB937_08450) - 1649396..1650028 (-) 633 WP_002991091.1 nicotinate-nucleotide adenylyltransferase -
  IB937_RS08455 (IB937_08455) yhbY 1650097..1650405 (-) 309 WP_002991094.1 ribosome assembly RNA-binding protein YhbY -
  IB937_RS08460 (IB937_08460) yqeH 1650430..1651548 (-) 1119 WP_011528256.1 ribosome biogenesis GTPase YqeH -
  IB937_RS08465 (IB937_08465) - 1651548..1652075 (-) 528 WP_002991099.1 YqeG family HAD IIIA-type phosphatase -
  IB937_RS08470 (IB937_08470) comX/sigX/comX2/sigX2 1652634..1653185 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=480891 IB937_RS08470 WP_010921894.1 1652634..1653185(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain BSAC_bs1388 isolate Invasive disease]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=480891 IB937_RS08470 WP_010921894.1 1652634..1653185(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain BSAC_bs1388 isolate Invasive disease]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.