Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IAR44_RS17105 Genome accession   NZ_CP061087
Coordinates   3508641..3509330 (-) Length   229 a.a.
NCBI ID   WP_061860922.1    Uniprot ID   -
Organism   Bacillus velezensis strain CLA178     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3503641..3514330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR44_RS17070 (IAR44_17070) - 3503839..3504321 (-) 483 WP_003151394.1 flagellar protein FlgN -
  IAR44_RS17075 (IAR44_17075) flgM 3504336..3504602 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  IAR44_RS17080 (IAR44_17080) - 3504672..3505091 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  IAR44_RS17085 (IAR44_17085) comFC 3505165..3505854 (-) 690 WP_198039463.1 phosphoribosyltransferase family protein Machinery gene
  IAR44_RS17090 (IAR44_17090) - 3505860..3506144 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  IAR44_RS17095 (IAR44_17095) comFA 3506202..3507587 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  IAR44_RS17100 (IAR44_17100) - 3507695..3508543 (-) 849 WP_061860921.1 DegV family protein -
  IAR44_RS17105 (IAR44_17105) degU 3508641..3509330 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  IAR44_RS17110 (IAR44_17110) degS 3509407..3510570 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  IAR44_RS17115 (IAR44_17115) - 3510793..3511440 (+) 648 WP_007407485.1 YigZ family protein -
  IAR44_RS17120 (IAR44_17120) - 3511445..3512659 (+) 1215 WP_015418337.1 LCP family protein -
  IAR44_RS17125 (IAR44_17125) - 3512758..3513834 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=480577 IAR44_RS17105 WP_061860922.1 3508641..3509330(-) (degU) [Bacillus velezensis strain CLA178]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSVHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=480577 IAR44_RS17105 WP_061860922.1 3508641..3509330(-) (degU) [Bacillus velezensis strain CLA178]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGTTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996