Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IBG29_RS09610 Genome accession   NZ_CP061073
Coordinates   2049086..2050423 (+) Length   445 a.a.
NCBI ID   WP_017002067.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAD8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2044086..2055423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBG29_RS09585 (IBG29_24470) pgeF 2044229..2044957 (-) 729 WP_034003227.1 peptidoglycan editing factor PgeF -
  IBG29_RS09590 (IBG29_24465) rluD 2044954..2045916 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IBG29_RS09595 (IBG29_24460) - 2046062..2047087 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  IBG29_RS09600 (IBG29_24455) - 2047244..2047489 (+) 246 WP_003102591.1 PP0621 family protein -
  IBG29_RS09605 (IBG29_24450) pilS 2047479..2049071 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  IBG29_RS09610 (IBG29_24445) pilR 2049086..2050423 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  IBG29_RS09615 (IBG29_24440) thiO 2050469..2051563 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  IBG29_RS09620 (IBG29_24435) - 2051698..2052207 (+) 510 WP_023088572.1 Tfp pilus assembly protein FimT/FimU -
  IBG29_RS09625 (IBG29_24430) - 2052313..2052819 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  IBG29_RS09630 (IBG29_24425) pilV 2052810..2053367 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  IBG29_RS09635 (IBG29_24420) pilW 2053364..2054188 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  IBG29_RS09640 (IBG29_24415) pilX 2054185..2054772 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49727.02 Da        Isoelectric Point: 5.8654

>NTDB_id=480303 IBG29_RS09610 WP_017002067.1 2049086..2050423(+) (pilR) [Pseudomonas aeruginosa strain PAD8]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLARESFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=480303 IBG29_RS09610 WP_017002067.1 2049086..2050423(+) (pilR) [Pseudomonas aeruginosa strain PAD8]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGTCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384