Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SPN994038_RS02560 Genome accession   NC_021026
Coordinates   476630..477679 (+) Length   349 a.a.
NCBI ID   WP_000653752.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN994038     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 471630..482679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN994038_RS02530 (SPN994038_04690) - 472755..473108 (+) 354 WP_000115730.1 hypothetical protein -
  SPN994038_RS02535 (SPN994038_04700) dnaJ 473313..474449 (+) 1137 WP_001066293.1 molecular chaperone DnaJ -
  SPN994038_RS12050 - 474771..474965 (-) 195 WP_001808905.1 hypothetical protein -
  SPN994038_RS02545 (SPN994038_04710) - 475127..475414 (-) 288 WP_000777760.1 hypothetical protein -
  SPN994038_RS02550 (SPN994038_04720) - 475424..475834 (-) 411 WP_001278301.1 HIT family protein -
  SPN994038_RS02555 (SPN994038_04730) pptA 475902..476633 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPN994038_RS02560 (SPN994038_04740) pptB 476630..477679 (+) 1050 WP_000653752.1 ABC transporter permease Regulator
  SPN994038_RS02565 (SPN994038_04750) - 477847..478176 (-) 330 WP_000132570.1 hypothetical protein -
  SPN994038_RS02570 (SPN994038_04760) - 478452..478790 (+) 339 WP_000682119.1 LytTR family DNA-binding domain-containing protein -
  SPN994038_RS02575 (SPN994038_04770) comE/blpR 478795..479532 (+) 738 WP_001219127.1 response regulator transcription factor Regulator
  SPN994038_RS02580 (SPN994038_04780) - 479546..480886 (+) 1341 WP_001017622.1 sensor histidine kinase -
  SPN994038_RS02585 (SPN994038_04790) blpC 480928..481083 (-) 156 WP_000358813.1 quorum-sensing system pheromone BlpC -
  SPN994038_RS02590 (SPN994038_04800) - 481140..482501 (-) 1362 WP_001069092.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40652.84 Da        Isoelectric Point: 9.9405

>NTDB_id=48027 SPN994038_RS02560 WP_000653752.1 476630..477679(+) (pptB) [Streptococcus pneumoniae SPN994038]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKVVQKVSGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQSWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=48027 SPN994038_RS02560 WP_000653752.1 476630..477679(+) (pptB) [Streptococcus pneumoniae SPN994038]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATTCTAAAGGTTGTTCAGAAGGTGTCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATTTGCGAAATGGAGACCTTTTTGCCCTTAGTCTCCGTCTGCTCTTGCTTTCT
TTGCTGGCGCAGGTCTTTATCGAGCAATCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTTTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(132-331)

Bacterial ABC transporter protein EcsB (EcsB)

(2-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476
  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467

Multiple sequence alignment