Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM04240196_RS14940 Genome accession   NC_017515
Coordinates   69327..69791 (+) Length   154 a.a.
NCBI ID   WP_162467419.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 64327..74791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS14940 comE 69327..69791 (+) 465 WP_162467419.1 ComEA family DNA-binding protein Machinery gene
  NMBM04240196_RS00380 (NMBM04240196_0066) dnaJ 70060..71181 (+) 1122 WP_002220105.1 molecular chaperone DnaJ -
  NMBM04240196_RS00385 (NMBM04240196_0067) - 71377..73395 (+) 2019 WP_002220107.1 oligopeptide transporter, OPT family -
  NMBM04240196_RS00390 (NMBM04240196_0068) rfbC 73439..73996 (-) 558 WP_002220108.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16573.86 Da        Isoelectric Point: 10.8645

>NTDB_id=48028 NMBM04240196_RS14940 WP_162467419.1 69327..69791(+) (comE) [Neisseria meningitidis M04-240196]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=48028 NMBM04240196_RS14940 WP_162467419.1 69327..69791(+) (comE) [Neisseria meningitidis M04-240196]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment