Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   IBL27_RS07810 Genome accession   NZ_CP061071
Coordinates   1597715..1598749 (-) Length   344 a.a.
NCBI ID   WP_002309440.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592715..1603749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS10090 - 1593512..1593607 (-) 96 Protein_1511 translation initiation factor IF-2 N-terminal domain-containing protein -
  IBL27_RS07775 (IBL27_07775) - 1593628..1593930 (-) 303 WP_002269515.1 YlxQ-related RNA-binding protein -
  IBL27_RS07780 (IBL27_07780) rnpM 1593923..1594219 (-) 297 WP_002309431.1 RNase P modulator RnpM -
  IBL27_RS07785 (IBL27_07785) nusA 1594237..1595430 (-) 1194 WP_002309437.1 transcription termination factor NusA -
  IBL27_RS07790 (IBL27_07790) rimP 1595466..1595957 (-) 492 WP_002267543.1 ribosome maturation factor RimP -
  IBL27_RS07800 (IBL27_07800) trmB 1596229..1596864 (-) 636 WP_002262605.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  IBL27_RS07805 (IBL27_07805) ccrZ 1596874..1597656 (-) 783 WP_002262606.1 cell cycle regulator CcrZ -
  IBL27_RS07810 (IBL27_07810) pptB 1597715..1598749 (-) 1035 WP_002309440.1 ABC transporter permease Regulator
  IBL27_RS07815 (IBL27_07815) pptA 1598752..1599477 (-) 726 WP_002262608.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS07820 (IBL27_07820) - 1599542..1599961 (+) 420 WP_002262609.1 HIT family protein -
  IBL27_RS07825 (IBL27_07825) - 1599958..1600251 (+) 294 WP_002265649.1 hypothetical protein -
  IBL27_RS07830 (IBL27_07830) brpA 1600421..1601641 (-) 1221 WP_002270523.1 biofilm formation/cell division transcriptional regulator BrpA -
  IBL27_RS07835 (IBL27_07835) tsaE 1601971..1602414 (-) 444 WP_002278621.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 40614.06 Da        Isoelectric Point: 10.6270

>NTDB_id=480266 IBL27_RS07810 WP_002309440.1 1597715..1598749(-) (pptB) [Streptococcus mutans B04Sm5]
MKAIFTKRRFHFINQCSRYLRYVFNDHFVLVLIFLLGFLMVQYSQLLKHFPANHWPIMLVLVLVVLTLLFWGNIATYLEP
ADQQFLLVREKDIVALIQKAKRRTLFFWGTWQTLLLLILAPLFLRLGLALFSFLFLLLFLLFLKGLIIEKKSRAFLKQKG
LNWDHALNQEKKRQQAILKFFSLFTNVKGISNSVKRRAYLDFGTKLLPKKTHKAWTNLYLRAFLRSGDYLGLTFRLGFLS
LLSLLFIDNPLMSAGLALLFNYLLLFQLLALYKHYDYQYLTALFPVSKAEKEANLKQLLRVILYFLTAVEFCFSFSWQKT
IILLLAMLCLNEVYLPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=480266 IBL27_RS07810 WP_002309440.1 1597715..1598749(-) (pptB) [Streptococcus mutans B04Sm5]
ATGAAGGCAATTTTTACAAAAAGACGATTCCATTTTATCAATCAATGCAGTCGATACCTTCGCTATGTTTTTAATGATCA
TTTTGTTTTAGTATTGATTTTTTTACTAGGTTTTCTTATGGTACAGTATAGTCAACTGTTAAAACATTTTCCGGCTAATC
ATTGGCCTATCATGCTTGTTTTAGTGTTAGTTGTCTTGACCTTACTATTTTGGGGAAATATAGCGACTTATTTGGAACCA
GCGGATCAGCAATTTCTTTTGGTCAGGGAAAAGGACATTGTTGCTTTAATCCAAAAAGCTAAAAGACGAACTCTTTTCTT
TTGGGGAACTTGGCAGACACTCTTGCTTCTTATTTTGGCACCTCTTTTTTTACGTTTGGGACTGGCACTTTTTTCTTTTC
TTTTTTTGCTCCTTTTTTTGCTCTTTTTAAAAGGATTGATCATTGAAAAAAAAAGCAGAGCTTTTTTGAAGCAGAAAGGA
CTGAACTGGGATCATGCTCTTAATCAAGAGAAAAAGCGGCAGCAGGCAATTTTAAAATTCTTTTCACTTTTTACCAATGT
TAAGGGAATTTCAAACAGCGTTAAGCGACGGGCTTATTTGGATTTTGGGACAAAATTATTGCCGAAGAAGACTCATAAAG
CATGGACTAATCTTTATTTAAGAGCTTTTTTACGCAGTGGCGATTATTTAGGACTGACCTTTCGTTTAGGTTTTTTAAGC
CTTTTAAGTCTTCTTTTTATTGATAATCCTTTAATGTCAGCAGGTTTAGCGCTCCTTTTTAATTACCTCTTGCTTTTTCA
ATTGTTGGCTCTTTATAAACATTATGATTATCAATATTTAACAGCCCTTTTTCCCGTTTCAAAAGCGGAGAAGGAGGCTA
ATTTGAAACAGTTATTGCGTGTTATTCTATATTTTCTAACAGCTGTTGAATTTTGTTTTAGCTTTTCATGGCAAAAGACA
ATTATTTTACTTTTGGCAATGCTTTGTCTCAATGAAGTTTATCTGCCTTACAAAATAAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-155)

Bacterial ABC transporter protein EcsB (EcsB)

(157-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

51.453

100

0.515
  pptB Streptococcus thermophilus LMD-9

50.291

100

0.503