Detailed information NTG0479862

Bioinformatically predicted

Overview

• Name: comGA
• Type: Machinery gene
• Locus tag: IAU62_RS05040
• Genome accession: NZ_CP061029
• Coordinates: 1042205..1043179 (-)
• Length: 324 a.a.
• NCBI ID: WP_002446534.1
• Uniprot ID: -
• Organism: Staphylococcus epidermidis strain Z0118SE0132
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1037205..1048179

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAU62_RS05005	gcvT	1037723..1038814 (-)	1092	WP_002446527.1	glycine cleavage system aminomethyltransferase GcvT	-
IAU62_RS05010	-	1039032..1039544 (-)	513	WP_002446528.1	shikimate kinase	-
IAU62_RS05015	comGF	1039709..1040200 (-)	492	WP_002446529.1	competence type IV pilus minor pilin ComGF	-
IAU62_RS05020	-	1040124..1040417 (-)	294	WP_002446530.1	hypothetical protein	-
IAU62_RS05025	comGD	1040404..1040841 (-)	438	WP_002446531.1	competence type IV pilus minor pilin ComGD	-
IAU62_RS05030	comGC	1040831..1041148 (-)	318	WP_002446532.1	competence type IV pilus major pilin ComGC	Machinery gene
IAU62_RS05035	comGB	1041166..1042233 (-)	1068	WP_002446533.1	competence type IV pilus assembly protein ComGB	Machinery gene
IAU62_RS05040	comGA	1042205..1043179 (-)	975	WP_002446534.1	competence type IV pilus ATPase ComGA	Machinery gene
IAU62_RS05045	-	1043236..1043859 (-)	624	WP_002446535.1	MBL fold metallo-hydrolase	-
IAU62_RS05050	-	1043859..1044185 (-)	327	WP_001831234.1	MTH1187 family thiamine-binding protein	-
IAU62_RS05055	-	1044185..1045171 (-)	987	WP_002446536.1	ROK family glucokinase	-
IAU62_RS05060	-	1045171..1045371 (-)	201	WP_002446537.1	YqgQ family protein	-
IAU62_RS05065	-	1045355..1046815 (-)	1461	WP_038813170.1	rhomboid family intramembrane serine protease	-
IAU62_RS05070	-	1046816..1047367 (-)	552	WP_002446539.1	5-formyltetrahydrofolate cyclo-ligase	-
IAU62_RS05075	rpmG	1047548..1047697 (-)	150	WP_001830957.1	50S ribosomal protein L33	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37261.33 Da
• Isoelectric Point: 8.8257

>NTDB_id=479862 IAU62_RS05040 WP_002446534.1 1042205..1043179(-) (comGA) [Staphylococcus epidermidis strain Z0118SE0132]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI

Nucleotide

• Length: 975 bp

>NTDB_id=479862 IAU62_RS05040 WP_002446534.1 1042205..1043179(-) (comGA) [Staphylococcus epidermidis strain Z0118SE0132]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATACACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGGTTAGATGTATCAACACAGCATAGGGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCGTTTATATTATTTAAGAATCTCTACATTACCGTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTAAACGAGAATCATATGAATTTAAAGATTTTAAACATTTCATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGGCCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCACATCAAAATTTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTAGAACAAATACTCAATGGAATCACACAAATATCAGTTAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCATTTTAAGGTGTGATCCGGACGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGTGGACATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATACTCGTCAACTAGTATCGGAATTAATGTTTCAAAGCCAAATCAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (7-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA	Staphylococcus aureus MW2	70.062	100	0.701
comGA	Staphylococcus aureus N315	70.062	100	0.701