Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   IAU62_RS05035 Genome accession   NZ_CP061029
Coordinates   1041166..1042233 (-) Length   355 a.a.
NCBI ID   WP_002446533.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0132     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036166..1047233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU62_RS05000 gcvPA 1036357..1037703 (-) 1347 WP_099774518.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IAU62_RS05005 gcvT 1037723..1038814 (-) 1092 WP_002446527.1 glycine cleavage system aminomethyltransferase GcvT -
  IAU62_RS05010 - 1039032..1039544 (-) 513 WP_002446528.1 shikimate kinase -
  IAU62_RS05015 comGF 1039709..1040200 (-) 492 WP_002446529.1 competence type IV pilus minor pilin ComGF -
  IAU62_RS05020 - 1040124..1040417 (-) 294 WP_002446530.1 hypothetical protein -
  IAU62_RS05025 comGD 1040404..1040841 (-) 438 WP_002446531.1 competence type IV pilus minor pilin ComGD -
  IAU62_RS05030 comGC 1040831..1041148 (-) 318 WP_002446532.1 competence type IV pilus major pilin ComGC Machinery gene
  IAU62_RS05035 comGB 1041166..1042233 (-) 1068 WP_002446533.1 competence type IV pilus assembly protein ComGB Machinery gene
  IAU62_RS05040 comGA 1042205..1043179 (-) 975 WP_002446534.1 competence type IV pilus ATPase ComGA Machinery gene
  IAU62_RS05045 - 1043236..1043859 (-) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  IAU62_RS05050 - 1043859..1044185 (-) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  IAU62_RS05055 - 1044185..1045171 (-) 987 WP_002446536.1 ROK family glucokinase -
  IAU62_RS05060 - 1045171..1045371 (-) 201 WP_002446537.1 YqgQ family protein -
  IAU62_RS05065 - 1045355..1046815 (-) 1461 WP_038813170.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42350.56 Da        Isoelectric Point: 10.0598

>NTDB_id=479861 IAU62_RS05035 WP_002446533.1 1041166..1042233(-) (comGB) [Staphylococcus epidermidis strain Z0118SE0132]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=479861 IAU62_RS05035 WP_002446533.1 1041166..1042233(-) (comGB) [Staphylococcus epidermidis strain Z0118SE0132]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.596

100

0.487
  comGB Staphylococcus aureus N315

48.596

100

0.487