Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   SPN034156_RS08565 Genome accession   NC_021006
Coordinates   1593360..1594409 (+) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588360..1599409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS08535 (SPN034156_15350) - 1589518..1589793 (+) 276 WP_000386177.1 hypothetical protein -
  SPN034156_RS08540 (SPN034156_15360) dnaJ 1589998..1591134 (+) 1137 WP_001841444.1 molecular chaperone DnaJ -
  SPN034156_RS12375 - 1591456..1591695 (-) 240 WP_001813906.1 hypothetical protein -
  SPN034156_RS08550 (SPN034156_15370) - 1591857..1592144 (-) 288 WP_000777760.1 hypothetical protein -
  SPN034156_RS08555 (SPN034156_15380) - 1592154..1592564 (-) 411 WP_001278301.1 HIT family protein -
  SPN034156_RS08560 (SPN034156_15390) pptA 1592632..1593363 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  SPN034156_RS08565 (SPN034156_15400) pptB 1593360..1594409 (+) 1050 WP_000653771.1 ABC transporter permease Regulator
  SPN034156_RS08570 (SPN034156_15410) - 1594577..1594906 (-) 330 WP_000132572.1 hypothetical protein -
  SPN034156_RS08575 (SPN034156_15420) - 1595181..1595519 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  SPN034156_RS08580 (SPN034156_15430) comE/blpR 1595524..1596261 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  SPN034156_RS08585 (SPN034156_15440) - 1596274..1597614 (+) 1341 WP_000275284.1 sensor histidine kinase -
  SPN034156_RS08590 (SPN034156_15450) blpC 1597659..1597814 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  SPN034156_RS08595 (SPN034156_15460) - 1597871..1599232 (-) 1362 WP_001069095.1 bacteriocin secretion accessory protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=47986 SPN034156_RS08565 WP_000653771.1 1593360..1594409(+) (pptB) [Streptococcus pneumoniae SPN034156]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=47986 SPN034156_RS08565 WP_000653771.1 1593360..1594409(+) (pptB) [Streptococcus pneumoniae SPN034156]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGG
CTGGACTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(2-156)

Bacterial ABC transporter protein EcsB (EcsB)

(158-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479
  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47

Multiple sequence alignment