Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   IBB94_RS06810 Genome accession   NZ_CP061024
Coordinates   1328583..1330076 (-) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   A0A2X3UVI7
Organism   Streptococcus thermophilus strain 13498     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323583..1335076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB94_RS06780 (IBB94_06790) - 1323713..1324090 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  IBB94_RS06785 (IBB94_06795) - 1324095..1324793 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  IBB94_RS06790 (IBB94_06800) - 1324805..1325590 (+) 786 WP_207559818.1 ABC transporter permease -
  IBB94_RS06795 (IBB94_06805) amiF 1325640..1326569 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  IBB94_RS06800 (IBB94_06810) amiE 1326562..1327647 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBB94_RS06805 (IBB94_06815) amiD 1327657..1328583 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  IBB94_RS06810 (IBB94_06820) amiC 1328583..1330076 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  IBB94_RS06815 (IBB94_06825) amiA3 1330137..1332110 (-) 1974 WP_101415657.1 peptide ABC transporter substrate-binding protein Regulator
  IBB94_RS06820 (IBB94_06830) - 1332416..1333563 (+) 1148 WP_095559415.1 IS3 family transposase -
  IBB94_RS06825 (IBB94_06835) - 1333601..1333785 (-) 185 Protein_1307 IS3 family transposase -
  IBB94_RS10410 (IBB94_06840) amiF 1333776..1333946 (-) 171 WP_014608546.1 hypothetical protein Regulator
  IBB94_RS06840 (IBB94_06850) - 1334174..1334534 (-) 361 Protein_1309 TatD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=479772 IBB94_RS06810 WP_064355564.1 1328583..1330076(-) (amiC) [Streptococcus thermophilus strain 13498]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=479772 IBB94_RS06810 WP_064355564.1 1328583..1330076(-) (amiC) [Streptococcus thermophilus strain 13498]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCTAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATTTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UVI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96