Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   IBB97_RS07210 Genome accession   NZ_CP061021
Coordinates   1387411..1389381 (-) Length   656 a.a.
NCBI ID   WP_207563400.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24739     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1389737..1405301 1387411..1389381 flank 356


Gene organization within MGE regions


Location: 1387411..1405301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB97_RS07210 (IBB97_07220) amiA3 1387411..1389381 (-) 1971 WP_207563400.1 peptide ABC transporter substrate-binding protein Regulator
  IBB97_RS07215 (IBB97_07225) - 1389737..1390914 (+) 1178 Protein_1381 ISL3 family transposase -
  IBB97_RS07220 (IBB97_07230) amiA3 1390959..1392932 (-) 1974 WP_138496747.1 peptide ABC transporter substrate-binding protein Regulator
  IBB97_RS07225 (IBB97_07235) - 1393285..1394438 (+) 1154 Protein_1383 ISL3 family transposase -
  IBB97_RS07230 (IBB97_07240) - 1394505..1396482 (-) 1978 Protein_1384 peptide ABC transporter substrate-binding protein -
  IBB97_RS07235 - 1396840..1398017 (+) 1178 Protein_1385 ISL3 family transposase -
  IBB97_RS07240 (IBB97_07255) - 1398062..1400039 (-) 1978 Protein_1386 peptide ABC transporter substrate-binding protein -
  IBB97_RS07245 (IBB97_07260) - 1400344..1401491 (+) 1148 WP_095559415.1 IS3 family transposase -
  IBB97_RS07250 (IBB97_07265) - 1401529..1401713 (-) 185 Protein_1388 IS3 family transposase -
  IBB97_RS10520 - 1401707..1402108 (-) 402 Protein_1389 ABC transporter ATP-binding protein -
  IBB97_RS07265 (IBB97_07280) - 1402103..1402463 (-) 361 Protein_1390 TatD family hydrolase -
  IBB97_RS07270 (IBB97_07285) - 1402809..1404014 (+) 1206 WP_011681420.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72324.68 Da        Isoelectric Point: 6.0142

>NTDB_id=479601 IBB97_RS07210 WP_207563400.1 1387411..1389381(-) (amiA3) [Streptococcus thermophilus strain 24739]
MKLKKILGITGVALLSVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKNIKIIFFTQHHKCVYISYCINIDRQSYKYTAKK
TDSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLAVRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVN
LADSQDGLYNAEKAKTEFAKAKDALQADGVQFPIHLDLPVNQSSKLNVAQVQSLKQTIEKSLGSENVVIDINQLSSDDLE
NATLNAANAAAEDWDISNGVGWGPDYQDPSTYLDILKTTSSENTKIFNGYDDPNNAAAAQVGLKNYDALLDSAASETTDI
NARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=479601 IBB97_RS07210 WP_207563400.1 1387411..1389381(-) (amiA3) [Streptococcus thermophilus strain 24739]
ATGAAACTTAAAAAAATTCTTGGAATTACGGGTGTAGCCCTTCTAAGTGTAGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAAAATATAAAGATAATATTTT
TTACACAGCACCATAAGTGCGTCTACATCAGCTATTGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAG
ACGGATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCG
TAAGGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGCTGTTCGTAACCTCTTTGTGCCTTCTGATTTTG
TGAGTGCAGGTGATAAGACCTTCGGAGATCTTGTAACAGAGAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAAT
CTTGCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCCAAGC
AGATGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTAACCAAAGCTCTAAACTTAATGTTGCCCAAGTCCAATCTT
TGAAACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAATTGTCATCTGATGATTTGGAA
AATGCAACACTTAATGCAGCCAACGCAGCAGCAGAAGACTGGGATATTTCTAACGGTGTGGGTTGGGGTCCAGACTATCA
AGATCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGATTTTCAATGGTTATGATGATCCAA
ACAATGCAGCAGCAGCCCAAGTAGGTCTTAAGAATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATC
AACGCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAA
CGGTGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACG
TCAAATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

93.465

100

0.937
  amiA3 Streptococcus thermophilus LMG 18311

92.249

100

0.925
  amiA Streptococcus salivarius strain HSISS4

87.062

100

0.872