Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   IBC08_RS06790 Genome accession   NZ_CP061019
Coordinates   1313531..1315024 (-) Length   497 a.a.
NCBI ID   WP_064355564.1    Uniprot ID   A0A2X3UVI7
Organism   Streptococcus thermophilus strain 24853     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1308531..1320024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS06760 (IBC08_06740) - 1308661..1309038 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  IBC08_RS06765 (IBC08_06745) - 1309043..1309741 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  IBC08_RS06770 (IBC08_06750) - 1309753..1310538 (+) 786 WP_207559818.1 ABC transporter permease -
  IBC08_RS06775 (IBC08_06755) amiF 1310588..1311517 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  IBC08_RS06780 (IBC08_06760) amiE 1311510..1312595 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS06785 (IBC08_06765) amiD 1312605..1313531 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  IBC08_RS06790 (IBC08_06770) amiC 1313531..1315024 (-) 1494 WP_064355564.1 ABC transporter permease Regulator
  IBC08_RS06795 (IBC08_06775) - 1315085..1317057 (-) 1973 Protein_1300 peptide ABC transporter substrate-binding protein -
  IBC08_RS06800 (IBC08_06780) - 1317363..1318510 (+) 1148 WP_095559415.1 IS3 family transposase -
  IBC08_RS06805 (IBC08_06785) - 1318548..1318732 (-) 185 Protein_1302 IS3 family transposase -
  IBC08_RS10380 (IBC08_06790) amiF 1318723..1318893 (-) 171 WP_014608546.1 hypothetical protein Regulator
  IBC08_RS06820 (IBC08_06800) - 1319121..1319481 (-) 361 Protein_1304 TatD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55866.73 Da        Isoelectric Point: 10.0536

>NTDB_id=479485 IBC08_RS06790 WP_064355564.1 1313531..1315024(-) (amiC) [Streptococcus thermophilus strain 24853]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKINYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGFPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=479485 IBC08_RS06790 WP_064355564.1 1313531..1315024(-) (amiC) [Streptococcus thermophilus strain 24853]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
TAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAGTACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCGCTACCGACGATTGCCTTGGTATATATCATTCGCTTGATTGGTTCTGAGATTGGTCTTCCGGATTC
TTTTCCTATCTTGGGTGCGGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCTAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGTTCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATTTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3UVI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96