Detailed information NTG0479484

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: IBC08_RS06785
• Genome accession: NZ_CP061019
• Coordinates: 1312605..1313531 (-)
• Length: 308 a.a.
• NCBI ID: WP_064355560.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24853
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1307605..1318531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC08_RS06755 (IBC08_06735)	-	1307683..1308477 (-)	795	WP_084829753.1	HAD family hydrolase	-
IBC08_RS06760 (IBC08_06740)	-	1308661..1309038 (+)	378	WP_011226300.1	GntR family transcriptional regulator	-
IBC08_RS06765 (IBC08_06745)	-	1309043..1309741 (+)	699	WP_011226301.1	ABC transporter ATP-binding protein	-
IBC08_RS06770 (IBC08_06750)	-	1309753..1310538 (+)	786	WP_207559818.1	ABC transporter permease	-
IBC08_RS06775 (IBC08_06755)	amiF	1310588..1311517 (-)	930	WP_011681415.1	ATP-binding cassette domain-containing protein	Regulator
IBC08_RS06780 (IBC08_06760)	amiE	1311510..1312595 (-)	1086	WP_011226304.1	ABC transporter ATP-binding protein	Regulator
IBC08_RS06785 (IBC08_06765)	amiD	1312605..1313531 (-)	927	WP_064355560.1	oligopeptide ABC transporter permease OppC	Regulator
IBC08_RS06790 (IBC08_06770)	amiC	1313531..1315024 (-)	1494	WP_064355564.1	ABC transporter permease	Regulator
IBC08_RS06795 (IBC08_06775)	-	1315085..1317057 (-)	1973	Protein_1300	peptide ABC transporter substrate-binding protein	-
IBC08_RS06800 (IBC08_06780)	-	1317363..1318510 (+)	1148	WP_095559415.1	IS3 family transposase	-

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34650.80 Da
• Isoelectric Point: 9.7054

>NTDB_id=479484 IBC08_RS06785 WP_064355560.1 1312605..1313531(-) (amiD) [Streptococcus thermophilus strain 24853]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILIAIVLMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide

• Length: 927 bp

>NTDB_id=479484 IBC08_RS06785 WP_064355560.1 1312605..1313531(-) (amiD) [Streptococcus thermophilus strain 24853]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTGCTATTG
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTTTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATTGGTATTGCCTACAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATTATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGATTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (125-306)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-71)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	99.351	100	0.994
amiD	Streptococcus thermophilus LMD-9	99.351	100	0.994
amiD	Streptococcus salivarius strain HSISS4	96.429	100	0.964