Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IBC08_RS06775 Genome accession   NZ_CP061019
Coordinates   1310588..1311517 (-) Length   309 a.a.
NCBI ID   WP_011681415.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24853     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1305588..1316517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC08_RS06750 (IBC08_06730) - 1306872..1307690 (-) 819 WP_011681411.1 Cof-type HAD-IIB family hydrolase -
  IBC08_RS06755 (IBC08_06735) - 1307683..1308477 (-) 795 WP_084829753.1 HAD family hydrolase -
  IBC08_RS06760 (IBC08_06740) - 1308661..1309038 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  IBC08_RS06765 (IBC08_06745) - 1309043..1309741 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  IBC08_RS06770 (IBC08_06750) - 1309753..1310538 (+) 786 WP_207559818.1 ABC transporter permease -
  IBC08_RS06775 (IBC08_06755) amiF 1310588..1311517 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  IBC08_RS06780 (IBC08_06760) amiE 1311510..1312595 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBC08_RS06785 (IBC08_06765) amiD 1312605..1313531 (-) 927 WP_064355560.1 oligopeptide ABC transporter permease OppC Regulator
  IBC08_RS06790 (IBC08_06770) amiC 1313531..1315024 (-) 1494 WP_064355564.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=479482 IBC08_RS06775 WP_011681415.1 1310588..1311517(-) (amiF) [Streptococcus thermophilus strain 24853]
MPEKLVEVKNVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=479482 IBC08_RS06775 WP_011681415.1 1310588..1311517(-) (amiF) [Streptococcus thermophilus strain 24853]
ATGCCTGAGAAATTAGTTGAAGTAAAAAATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCACACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAATAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

100

100

1
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977