Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMBM01240149_RS00100 Genome accession   NC_017514
Coordinates   17551..18087 (-) Length   178 a.a.
NCBI ID   WP_041423465.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12551..23087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS00085 (NMBM01240149_0017) gnd 13072..14520 (-) 1449 WP_014580884.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NMBM01240149_RS00095 (NMBM01240149_0018) lpxC 15933..16856 (-) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NMBM01240149_RS00100 (NMBM01240149_0019) pilE 17551..18087 (-) 537 WP_041423465.1 pilin Machinery gene
  NMBM01240149_RS00105 (NMBM01240149_0020) - 19181..19576 (-) 396 Protein_19 pilin -
  NMBM01240149_RS00110 (NMBM01240149_0021) - 19842..20242 (-) 401 Protein_20 pilin -
  NMBM01240149_RS00115 (NMBM01240149_0022) - 20349..20759 (-) 411 Protein_21 pilin -
  NMBM01240149_RS00120 (NMBM01240149_0023) - 21041..21382 (-) 342 Protein_22 pilin -
  NMBM01240149_RS15775 (NMBM01240149_0024) - 21440..21805 (-) 366 Protein_23 pilin -
  NMBM01240149_RS00130 (NMBM01240149_0025) - 21834..22163 (-) 330 WP_002218455.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NMBM01240149_RS00135 (NMBM01240149_0026) - 22241..22459 (-) 219 WP_002218456.1 DUF2061 domain-containing protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19055.53 Da        Isoelectric Point: 6.4552

>NTDB_id=47937 NMBM01240149_RS00100 WP_041423465.1 17551..18087(-) (pilE) [Neisseria meningitidis M01-240149]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNTSAGVATSADIK
GKYVQSVTVANGVVTAQMASSGVNKEIQGRKLSLWAKRQNGSVKWFCGQPVTRDATNADDVTADGNDKIDTKHLPSTCRD
DSSVVCIETPPTAFYKNT

Nucleotide


Download         Length: 537 bp        

>NTDB_id=47937 NMBM01240149_RS00100 WP_041423465.1 17551..18087(-) (pilE) [Neisseria meningitidis M01-240149]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATAGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAGGCCATTCTTTTGGCTGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCGAATGGCCCGGCAACAACACTTCTGCCGGCGTGGCAACCTCCGCCGACATTAAA
GGCAAATATGTTCAAAGCGTTACAGTCGCAAACGGCGTCGTTACCGCCCAAATGGCTTCAAGCGGCGTAAACAAAGAAAT
CCAAGGCAGAAAACTCTCCCTGTGGGCCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
ACGCCACCAACGCCGACGACGTTACCGCCGACGGCAACGACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGAT
GATTCATCTGTCGTTTGCATAGAAACACCACCTACGGCTTTCTATAAAAATACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-159)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

85.276

91.573

0.781
  pilE Neisseria gonorrhoeae MS11

80.723

93.258

0.753

Multiple sequence alignment