Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IAG34_RS05810 Genome accession   NZ_CP060994
Coordinates   1199008..1199715 (-) Length   235 a.a.
NCBI ID   WP_000203217.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CAb-65     
Function   regulate competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1175894..1204779 1199008..1199715 within 0


Gene organization within MGE regions


Location: 1175894..1204779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS05665 (IAG34_05660) - 1175894..1176085 (+) 192 WP_001139861.1 hypothetical protein -
  IAG34_RS05670 (IAG34_05665) - 1176199..1176966 (+) 768 WP_000770049.1 DUF6651 domain-containing protein -
  IAG34_RS05675 (IAG34_05670) - 1176994..1177950 (+) 957 WP_000214198.1 major capsid protein -
  IAG34_RS05680 (IAG34_05675) - 1178015..1178680 (+) 666 WP_032023227.1 Ish1 domain-containing protein -
  IAG34_RS05685 (IAG34_05680) - 1178685..1179074 (+) 390 WP_000008494.1 hypothetical protein -
  IAG34_RS05690 (IAG34_05685) - 1179076..1179444 (+) 369 WP_046660563.1 hypothetical protein -
  IAG34_RS05695 (IAG34_05690) - 1179495..1179914 (+) 420 WP_031981133.1 hypothetical protein -
  IAG34_RS05700 (IAG34_05695) - 1179914..1180366 (+) 453 WP_031981134.1 hypothetical protein -
  IAG34_RS05705 (IAG34_05700) - 1180431..1180835 (+) 405 WP_046128237.1 hypothetical protein -
  IAG34_RS05710 (IAG34_05705) - 1180807..1181175 (+) 369 WP_046128236.1 hypothetical protein -
  IAG34_RS05715 (IAG34_05710) - 1181177..1181575 (+) 399 WP_030423713.1 phage tail terminator-like protein -
  IAG34_RS05720 (IAG34_05715) - 1181577..1181789 (+) 213 WP_030423712.1 hypothetical protein -
  IAG34_RS05725 (IAG34_05720) - 1181895..1182824 (+) 930 WP_023060482.1 phage tail tube protein -
  IAG34_RS05730 (IAG34_05725) - 1182872..1183396 (+) 525 WP_217408594.1 hypothetical protein -
  IAG34_RS05735 (IAG34_05730) - 1183793..1185118 (+) 1326 WP_227555497.1 STAS-like domain-containing protein -
  IAG34_RS05740 (IAG34_05735) - 1185317..1185493 (+) 177 WP_014466185.1 hypothetical protein -
  IAG34_RS19475 (IAG34_05740) - 1185502..1185912 (+) 411 WP_032032007.1 DUF4236 domain-containing protein -
  IAG34_RS05750 (IAG34_05745) - 1185922..1186269 (+) 348 WP_032032008.1 hypothetical protein -
  IAG34_RS05755 (IAG34_05750) - 1186324..1186725 (+) 402 WP_000720610.1 J517_1871 family lipoprotein -
  IAG34_RS05760 (IAG34_05755) - 1186784..1187719 (+) 936 Protein_1111 tape measure protein -
  IAG34_RS05765 (IAG34_05760) - 1187794..1188063 (+) 270 WP_217408595.1 hypothetical protein -
  IAG34_RS05770 (IAG34_05765) - 1188156..1189361 (-) 1206 WP_032068398.1 tyrosine-type recombinase/integrase -
  IAG34_RS05775 (IAG34_05770) alaS 1189648..1192284 (-) 2637 WP_000199457.1 alanine--tRNA ligase -
  IAG34_RS05780 (IAG34_05775) gap 1192554..1193579 (+) 1026 WP_001188823.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  IAG34_RS05785 (IAG34_05780) - 1193855..1195021 (+) 1167 WP_000155680.1 ATP phosphoribosyltransferase regulatory subunit -
  IAG34_RS05790 (IAG34_05785) - 1195086..1196405 (+) 1320 WP_000517792.1 adenylosuccinate synthase -
  IAG34_RS05795 (IAG34_05790) - 1196527..1196844 (+) 318 WP_000776215.1 hypothetical protein -
  IAG34_RS05800 (IAG34_05795) - 1196961..1197740 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  IAG34_RS05805 (IAG34_05800) - 1197798..1198847 (-) 1050 WP_002059731.1 NADP(H)-dependent aldo-keto reductase -
  IAG34_RS05810 (IAG34_05805) crp 1199008..1199715 (-) 708 WP_000203217.1 cAMP-activated global transcriptional regulator CRP Regulator
  IAG34_RS05815 - 1199956..1200075 (+) 120 Protein_1122 hypothetical protein -
  IAG34_RS05820 (IAG34_05810) - 1200154..1200576 (+) 423 WP_001195082.1 OsmC family protein -
  IAG34_RS05825 (IAG34_05815) - 1200671..1201096 (+) 426 WP_002059735.1 GNAT family N-acetyltransferase -
  IAG34_RS05830 (IAG34_05820) - 1201093..1201899 (-) 807 WP_001237336.1 peptidoglycan DD-metalloendopeptidase family protein -
  IAG34_RS05835 (IAG34_05825) clpB 1202200..1204779 (+) 2580 WP_001210050.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26567.18 Da        Isoelectric Point: 4.6625

>NTDB_id=479352 IAG34_RS05810 WP_000203217.1 1199008..1199715(-) (crp) [Acinetobacter baumannii strain CAb-65]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=479352 IAG34_RS05810 WP_000203217.1 1199008..1199715(-) (crp) [Acinetobacter baumannii strain CAb-65]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.574

100

0.996
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4