Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IAG34_RS02960 Genome accession   NZ_CP060994
Coordinates   622419..622829 (+) Length   136 a.a.
NCBI ID   WP_002017231.1    Uniprot ID   N9KEH5
Organism   Acinetobacter baumannii strain CAb-65     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617419..627829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS02945 (IAG34_02940) - 618409..620715 (+) 2307 WP_000259108.1 RelA/SpoT family protein -
  IAG34_RS02950 (IAG34_02945) - 620759..621532 (-) 774 WP_139845823.1 SDR family oxidoreductase -
  IAG34_RS02955 (IAG34_02950) mazG 621644..622450 (+) 807 WP_000359497.1 nucleoside triphosphate pyrophosphohydrolase -
  IAG34_RS02960 (IAG34_02955) comEA 622419..622829 (+) 411 WP_002017231.1 ComEA family DNA-binding protein Machinery gene
  IAG34_RS02965 (IAG34_02960) pcnB 622954..624417 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  IAG34_RS02970 (IAG34_02965) folK 624414..624896 (+) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  IAG34_RS02975 (IAG34_02970) panB 624942..625751 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  IAG34_RS02980 (IAG34_02975) panC 625755..626603 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  IAG34_RS02985 (IAG34_02980) rapZ 626626..627477 (+) 852 WP_000821671.1 RNase adapter RapZ -
  IAG34_RS02990 (IAG34_02985) - 627474..627743 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.89 Da        Isoelectric Point: 10.3828

>NTDB_id=479347 IAG34_RS02960 WP_002017231.1 622419..622829(+) (comEA) [Acinetobacter baumannii strain CAb-65]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=479347 IAG34_RS02960 WP_002017231.1 622419..622829(+) (comEA) [Acinetobacter baumannii strain CAb-65]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KEH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.794

100

0.978
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412