Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H9N23_RS10580 Genome accession   NZ_CP060817
Coordinates   2300091..2301542 (+) Length   483 a.a.
NCBI ID   WP_173340383.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain C9-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2295091..2306542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9N23_RS10560 (H9N23_10540) - 2295288..2295584 (-) 297 WP_011408075.1 hypothetical protein -
  H9N23_RS10565 (H9N23_10545) sucD 2295904..2296779 (-) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  H9N23_RS10570 (H9N23_10550) sucC 2296804..2297973 (-) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  H9N23_RS10575 (H9N23_10555) - 2298207..2299820 (+) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  H9N23_RS10580 (H9N23_10560) pilR 2300091..2301542 (+) 1452 WP_173340383.1 sigma-54 dependent transcriptional regulator Regulator
  H9N23_RS10585 (H9N23_10565) - 2301615..2301821 (+) 207 WP_027703281.1 YhfG family protein -
  H9N23_RS23430 - 2301883..2302044 (+) 162 WP_153296778.1 hypothetical protein -
  H9N23_RS23435 - 2302132..2302392 (+) 261 WP_011408073.1 Fic family protein -
  H9N23_RS10595 (H9N23_10575) pilB 2302401..2304134 (-) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H9N23_RS10600 (H9N23_10580) - 2304169..2305695 (-) 1527 WP_042464666.1 membrane protein -
  H9N23_RS10605 (H9N23_10585) - 2305665..2306294 (-) 630 WP_011408070.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52431.16 Da        Isoelectric Point: 6.9755

>NTDB_id=478567 H9N23_RS10580 WP_173340383.1 2300091..2301542(+) (pilR) [Xanthomonas oryzae pv. oryzae strain C9-3]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKNLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=478567 H9N23_RS10580 WP_173340383.1 2300091..2301542(+) (pilR) [Xanthomonas oryzae pv. oryzae strain C9-3]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCGGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTGC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462