Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IAQ69_RS13945 Genome accession   NZ_CP060811
Coordinates   2905346..2906767 (+) Length   473 a.a.
NCBI ID   WP_200230880.1    Uniprot ID   A0A7T8ASQ1
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900346..2911767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13925 (IAQ69_13920) - 2901132..2901794 (+) 663 WP_004783898.1 IS1595-like element ISAcra1 family transposase -
  IAQ69_RS13930 (IAQ69_13925) - 2901831..2902883 (-) 1053 WP_034703413.1 serine hydrolase -
  IAQ69_RS13935 (IAQ69_13930) - 2903100..2903735 (+) 636 WP_005233474.1 response regulator -
  IAQ69_RS13940 (IAQ69_13935) pilS 2903763..2905328 (+) 1566 WP_179992207.1 sensor histidine kinase Regulator
  IAQ69_RS13945 (IAQ69_13940) pilR 2905346..2906767 (+) 1422 WP_200230880.1 sigma-54-dependent transcriptional regulator Regulator
  IAQ69_RS13950 (IAQ69_13945) - 2906768..2907940 (-) 1173 WP_200229191.1 S41 family peptidase -
  IAQ69_RS13955 (IAQ69_13950) gpmI 2907964..2909511 (-) 1548 WP_179992209.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IAQ69_RS13960 (IAQ69_13955) lptG 2909636..2910706 (-) 1071 WP_179992210.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53674.72 Da        Isoelectric Point: 6.2027

>NTDB_id=478555 IAQ69_RS13945 WP_200230880.1 2905346..2906767(+) (pilR) [Acinetobacter variabilis strain XM9F202-2]
MVEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKCLRDHQYDACLTDLNLPDGNGLQFLDWINQHSPHLPV
AVLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYYQNNSNDSLEHKLLIGQSLPIQQLRVTLKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDTEIDVDFRVISASHQDLDALVQQGKFRQDLFFRIHVMDLVLPPLRERGQDIL
LLAEHFVQKICQEWEIPAKKLTERSKEFLLEQYYPGNVRELRNIIERAITLSDEDKIDLQHLQTAPLRHTVSVQSETANL
AEPTSSTDQIIIPKKLPEEGLELYLEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEEE

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=478555 IAQ69_RS13945 WP_200230880.1 2905346..2906767(+) (pilR) [Acinetobacter variabilis strain XM9F202-2]
ATTGTGGAACAACAACCACTGGTTTTATTGGTGGATGATGAGGAAGATCTATGTACCCTCATGCAAATGTCATTGATGCG
CATGGGAATCCGTACGCATATTGCCCATCGTCTGGAAGATGCAAAAAAATGTCTTAGGGATCATCAATATGATGCCTGTC
TGACAGATCTAAATCTTCCTGATGGCAATGGTCTGCAATTTCTGGACTGGATTAACCAGCATTCCCCTCACCTTCCGGTA
GCTGTTCTAACGGCTTATGGCAATATGGATATTGCTATTGCTGCACTCAAGGCAGGTGCATTTGACTTTGTTAGCAAACC
GATCAATCAAAAGCATCTGGAACAACTGCTGCAAAAAGCACTGAATAAACCAGTAGACTATTATCAGAATAATTCCAATG
ATTCATTAGAACATAAATTGCTGATTGGACAATCTCTGCCTATTCAGCAATTGCGGGTCACCTTGAAAAAAATTGCCCGT
TCTCAAGCTCCGGTATTTATTACTGGTGAATCAGGGACCGGGAAAGAAGTGGTGGCCAATCTGGTCCATCGTCTTAGTAA
CCGCAATGAAGGACCTTTTATCGCGATTAACTGCGGTGCAATCCCGACTGAATTAATGGAAAGTGAACTGTTTGGCCACA
AGAAAGGCAGCTTTACTGGCGCGACTCAGGACAAACAAGGACTAATTCAGTCTGCCCATGGAGGTAGTTTGTTCTTAGAT
GAAATCGCCGAATTACCGCTATCTATGCAGGTTAAACTGTTACGTGCCGTCCAGGAAAAACGCATTCGTCCCGTCGGTTC
CGATACTGAAATTGATGTCGATTTCCGTGTCATTAGTGCCAGCCACCAGGATCTCGATGCGCTGGTACAACAAGGCAAAT
TCCGTCAGGATTTGTTCTTCCGTATTCACGTGATGGATCTGGTCTTACCACCACTGCGTGAGCGCGGCCAAGATATTCTG
CTCCTCGCTGAGCATTTTGTTCAAAAGATCTGTCAGGAATGGGAGATTCCTGCGAAAAAACTGACGGAACGGAGCAAGGA
ATTTTTACTGGAGCAATACTATCCGGGCAATGTGCGTGAACTGCGCAATATCATTGAACGTGCCATTACTTTGAGTGATG
AAGATAAGATTGACCTTCAGCATCTGCAAACTGCTCCACTGCGTCATACGGTATCCGTCCAATCAGAAACGGCAAATCTG
GCAGAGCCGACCTCATCTACGGATCAGATCATTATTCCCAAGAAACTCCCCGAGGAAGGTCTGGAACTGTATTTAGAAAA
GATTGAAAAAGAAATTCTCCTGAATGCTTTGAATCTGACGCATTGGAATCGTACATTGGCCGCCAAAAAACTCGGTATGT
CGTTTCGCTCTTTACGTTATCGTCTGAAAAAATTCGGACTGGATACCGAAGAAGAGGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T8ASQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

75.468

100

0.767
  pilR Pseudomonas aeruginosa PAK

48.59

97.463

0.474