Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IAQ69_RS13940 Genome accession   NZ_CP060811
Coordinates   2903763..2905328 (+) Length   521 a.a.
NCBI ID   WP_179992207.1    Uniprot ID   A0A7T7WIQ0
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898763..2910328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13920 (IAQ69_13915) thrC 2899893..2901032 (+) 1140 WP_180070115.1 threonine synthase -
  IAQ69_RS13925 (IAQ69_13920) - 2901132..2901794 (+) 663 WP_004783898.1 IS1595-like element ISAcra1 family transposase -
  IAQ69_RS13930 (IAQ69_13925) - 2901831..2902883 (-) 1053 WP_034703413.1 serine hydrolase -
  IAQ69_RS13935 (IAQ69_13930) - 2903100..2903735 (+) 636 WP_005233474.1 response regulator -
  IAQ69_RS13940 (IAQ69_13935) pilS 2903763..2905328 (+) 1566 WP_179992207.1 sensor histidine kinase Regulator
  IAQ69_RS13945 (IAQ69_13940) pilR 2905346..2906767 (+) 1422 WP_200230880.1 sigma-54-dependent transcriptional regulator Regulator
  IAQ69_RS13950 (IAQ69_13945) - 2906768..2907940 (-) 1173 WP_200229191.1 S41 family peptidase -
  IAQ69_RS13955 (IAQ69_13950) gpmI 2907964..2909511 (-) 1548 WP_179992209.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59735.80 Da        Isoelectric Point: 6.3704

>NTDB_id=478554 IAQ69_RS13940 WP_179992207.1 2903763..2905328(+) (pilS) [Acinetobacter variabilis strain XM9F202-2]
MAQTSSYSELNQYHLGLWYSAYRLIISTGLLLIFLLTYPDMTTDYQYPKLYHYALMISVAVNTVQLFTLRWVKRLIQPQF
ILIFASDVFFLSLLTLASQGPNVHLGLIFVITIFSASLLLDAKKALIITLIAVISIIYQHFIGSIFAFSSLTNIGNSALL
AFLFFVVYGSGQIAVRRFQILENLNFSQSLELYRLQNINRYILEQIETGYLVLDENYHVVLSNPAACHLLGIEPMYAHER
FSLYQSQNDLFELIRFENLENGERFQFESQQSRYNIHVQVQKLIVPHQTLTLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLYLDSEPEQQQVLHQMISRQATRIDRIIQDTLNMVKNKETHPVVIQLNEFILLFIQEDLADVAD
QIQFNIDVPLAIQFDEAQLRQILINLIRNAIRHNSPDSSHIQLNIHPYEHKVWIDVRDFGSGVATHDQELLFKPFFSTSI
HGTGLGLYLSHSFCEANQAQLNYISQEQGACFRISCQRVTA

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=478554 IAQ69_RS13940 WP_179992207.1 2903763..2905328(+) (pilS) [Acinetobacter variabilis strain XM9F202-2]
ATGGCGCAAACATCCAGTTATTCTGAACTGAATCAATATCATCTGGGCCTATGGTATAGCGCCTACCGCCTGATTATCAG
CACGGGTCTGTTGCTGATTTTTCTGCTGACTTATCCTGATATGACTACAGATTATCAGTATCCTAAACTCTATCACTATG
CCTTAATGATTAGCGTCGCCGTCAATACTGTGCAGCTGTTTACGCTGAGATGGGTAAAGCGCCTGATTCAGCCACAGTTC
ATTCTGATTTTTGCCAGCGATGTCTTTTTTCTCAGTTTATTGACCTTGGCCAGTCAGGGTCCAAATGTCCATCTCGGACT
GATTTTTGTTATTACCATTTTTTCAGCTTCATTATTACTGGATGCCAAGAAGGCCCTGATCATCACCCTGATTGCGGTGA
TTAGTATCATCTATCAGCATTTTATCGGCAGTATTTTTGCCTTTTCCTCGCTTACCAATATCGGGAATAGTGCCCTGCTG
GCCTTTTTGTTTTTTGTCGTCTATGGCTCAGGACAAATTGCGGTACGGCGCTTTCAGATTCTGGAAAACCTGAATTTTTC
TCAATCGCTGGAACTATATCGCTTACAGAATATTAACCGCTATATTCTGGAACAGATTGAAACCGGCTATCTGGTTTTAG
ATGAGAATTACCATGTGGTGCTCAGTAATCCGGCTGCCTGTCATCTGCTCGGCATTGAGCCAATGTATGCCCATGAAAGA
TTTTCGTTATACCAATCTCAAAATGACCTGTTTGAACTGATCCGTTTTGAAAATCTGGAAAATGGCGAGCGGTTTCAATT
TGAATCCCAGCAGAGTCGTTATAATATTCACGTGCAGGTACAAAAGCTGATTGTGCCGCACCAGACTCTGACTCTCCTCG
TGCTGCAAGATGCCCGCAAACTTAATCAGCAGGTGCAACAGTTAAAGCTTGCTGCTCTAGGCCAGCTTTCCGCCAGTATT
GCCCATGAAATTCGCAATCCTCTGGCTGCCATTGTACAGGCCAATGATCTTTATCTCGATTCTGAACCTGAACAGCAACA
GGTCCTGCATCAGATGATCAGCCGACAGGCCACCCGGATTGACCGGATTATTCAGGACACCCTGAATATGGTGAAAAACA
AGGAAACCCATCCGGTCGTAATTCAGCTGAATGAATTTATCCTACTGTTTATTCAGGAGGATTTAGCAGATGTGGCGGAC
CAGATTCAATTTAATATTGATGTACCACTGGCAATTCAGTTTGATGAGGCCCAGTTACGTCAGATTCTAATTAACCTGAT
TCGTAATGCTATCCGTCATAATTCACCGGATTCATCCCATATTCAATTGAATATTCACCCATATGAACATAAGGTATGGA
TAGATGTCCGGGATTTTGGCTCTGGTGTTGCCACCCATGATCAGGAATTATTATTTAAACCTTTTTTCAGCACGTCTATC
CATGGAACGGGACTCGGACTATATTTATCACACAGTTTTTGTGAAGCCAATCAGGCACAACTCAACTACATTTCACAAGA
ACAGGGCGCATGCTTTCGGATTAGCTGTCAACGTGTGACAGCATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7WIQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.02

96.929

0.562