Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IAQ69_RS05590 Genome accession   NZ_CP060811
Coordinates   1216069..1216776 (+) Length   235 a.a.
NCBI ID   WP_004782527.1    Uniprot ID   A0AAU0NHI4
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1211069..1221776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS05575 (IAQ69_05575) - 1211926..1214163 (+) 2238 WP_034170011.1 NADP-dependent isocitrate dehydrogenase -
  IAQ69_RS05580 (IAQ69_05580) - 1214412..1215455 (+) 1044 WP_200230367.1 metallophosphoesterase -
  IAQ69_RS05585 (IAQ69_05585) - 1215499..1215921 (-) 423 WP_004782528.1 OsmC family protein -
  IAQ69_RS05590 (IAQ69_05590) crp 1216069..1216776 (+) 708 WP_004782527.1 cAMP-activated global transcriptional regulator CRP Regulator
  IAQ69_RS05595 (IAQ69_05595) - 1216970..1218019 (+) 1050 WP_200230375.1 NADP(H)-dependent aldo-keto reductase -
  IAQ69_RS05600 (IAQ69_05600) - 1218160..1218525 (+) 366 WP_200230377.1 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein -
  IAQ69_RS05605 (IAQ69_05605) clpB 1218779..1221358 (+) 2580 WP_200230379.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26330.00 Da        Isoelectric Point: 4.6729

>NTDB_id=478529 IAQ69_RS05590 WP_004782527.1 1216069..1216776(+) (crp) [Acinetobacter variabilis strain XM9F202-2]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEEPEAVGAGEFEDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=478529 IAQ69_RS05590 WP_004782527.1 1216069..1216776(+) (crp) [Acinetobacter variabilis strain XM9F202-2]
ATGACTTCAAACTTTTCACAATTAAGCACAGACGCACTTTCGCCGGGGCAACTACCTGAATCAGTGAAGGCGTTATTAAA
ACGTGCATATATCAATCGCTATCCAAAACGTACCACGATCGTGGATGCAGGATCAGAATCTAAATCTCTGTATTTAATTC
TGAAGGGGTCTGTGTCTATCATTCTTCGTGAAGATGATGAACGTGAGATTGTGGTAGCTTATTTAAATGCGGGAGACTTC
TTTGGGGAAATGGGTCTTTTCGAAGCAAATCCACAGCGTACTGCAGAAGTGCGTACTCGTGATGTCTGTGAAATTGCTGA
AATTACCTATGAAAACTTTCATGAAATTAGCAAACAATATCCAGACCTTAGCTATGCAGTTTTTGCCCAGCTGGTTCGCC
GTCTGAAAAATACCACACGTAAAGTGACTGACCTGGCATTTATCGATGTGTCTGGTCGTATTGCACGTTGTCTGATTGAC
CTGTCATCTCAGCCAGAAGCGATGATCTTGCCAAATGGTCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
TGGGTGTTCACGTGAAATGGTCGGTCGTGTTCTAAAAACTCTAGAAGAACAGGGCATGATTGAAACCGATGGTAAGGCGA
TTCTGATTTTTGATGCATCGCTGGAAGAACCTGAAGCAGTGGGTGCTGGCGAGTTCGAAGACGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

95.067

94.894

0.902
  crp Vibrio cholerae strain A1552

46.829

87.234

0.409
  crp Haemophilus influenzae Rd KW20

47.692

82.979

0.396