Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   J3K87_RS05790 Genome accession   NZ_CP071698
Coordinates   1276226..1276891 (+) Length   221 a.a.
NCBI ID   WP_005619495.1    Uniprot ID   A0ABM6X4X3
Organism   Actinobacillus pleuropneumoniae strain SC1810     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271226..1281891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3K87_RS05765 (J3K87_05740) fabB 1271830..1273050 (+) 1221 WP_009875222.1 beta-ketoacyl-ACP synthase I -
  J3K87_RS05770 (J3K87_05745) - 1273242..1274576 (+) 1335 Protein_1130 IS3 family transposase -
  J3K87_RS05775 (J3K87_05750) - 1274723..1275070 (+) 348 WP_005612458.1 NirD/YgiW/YdeI family stress tolerance protein -
  J3K87_RS05780 (J3K87_05755) - 1275126..1275722 (+) 597 WP_005608264.1 NirD/YgiW/YdeI family stress tolerance protein -
  J3K87_RS05785 (J3K87_05760) - 1275763..1276137 (+) 375 WP_005615415.1 NirD/YgiW/YdeI family stress tolerance protein -
  J3K87_RS05790 (J3K87_05765) ciaR 1276226..1276891 (+) 666 WP_005619495.1 response regulator Regulator
  J3K87_RS05795 (J3K87_05770) - 1276884..1278260 (+) 1377 WP_005597899.1 ATP-binding protein -
  J3K87_RS05800 (J3K87_05775) - 1278308..1278868 (-) 561 WP_005597901.1 YtfJ family protein -
  J3K87_RS05805 (J3K87_05780) yajC 1279062..1279358 (+) 297 WP_005597904.1 preprotein translocase subunit YajC -
  J3K87_RS05810 (J3K87_05785) secD 1279385..1281232 (+) 1848 WP_080550263.1 protein translocase subunit SecD -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25153.05 Da        Isoelectric Point: 5.7945

>NTDB_id=478463 J3K87_RS05790 WP_005619495.1 1276226..1276891(+) (ciaR) [Actinobacillus pleuropneumoniae strain SC1810]
MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGLAILKNWRKENLDIPVLILTA
RDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRYKQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLL
FASNKDRVLTRSAIEEKLYSWDNDVSSNAMEVYIHNLRKKLGKEWIKTVHGIGYKIGNSDA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=478463 J3K87_RS05790 WP_005619495.1 1276226..1276891(+) (ciaR) [Actinobacillus pleuropneumoniae strain SC1810]
ATGCGTATTCTACTGATTGAAGACGACAAACTAATCGGTGACGGCTTAAAGCTGGGACTAACCAAACAAAATTTTGTCGT
TGATTGGTTCCAAGACGGCAAATTAGGCTTTGAAGCGTTATTCTCTACCGAATATGATGCGGTCGTTTTGGATTTAACGT
TACCTAAAATGGACGGTTTAGCCATTCTGAAAAATTGGCGTAAAGAAAATCTGGATATTCCGGTTTTAATCTTAACCGCA
AGGGATACGTTAGACGAAAGAATATTGGGATTTAATTCCGGTGCGGACGATTATCTCTGTAAGCCGTTTGCATTAATGGA
AGTGGTCGTCCGTTTACAAGCTCTAATTCGCCGCCGTTATAAACAGAGTTCCACCGAAATTACTCTCGGTGATCTGACGA
TTGACAGCAGTACCCACAAAGTAACCCTTGCCGATAAAGAAATCAATTTAACCTCGAAAGAATTTCAATTGCTGTTACTG
TTTGCCAGTAATAAAGATCGTGTTTTGACGCGTTCCGCTATCGAAGAAAAATTATACAGTTGGGATAACGACGTCAGCAG
TAACGCTATGGAAGTTTATATCCATAATTTACGTAAAAAACTCGGTAAAGAATGGATCAAAACCGTACACGGCATAGGTT
ATAAAATAGGAAATTCAGATGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

37.778

100

0.385
  ciaR Streptococcus pneumoniae D39

37.778

100

0.385
  ciaR Streptococcus pneumoniae R6

37.778

100

0.385
  ciaR Streptococcus pneumoniae TIGR4

37.778

100

0.385
  ciaR Streptococcus mutans UA159

37.9

99.095

0.376