Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   H7H20_RS18305 Genome accession   NZ_CP060732
Coordinates   3775480..3776232 (-) Length   250 a.a.
NCBI ID   WP_196612760.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain abA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3770480..3781232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7H20_RS18285 aroB 3771028..3772110 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  H7H20_RS18290 aroK 3772139..3772708 (-) 570 WP_000643712.1 shikimate kinase AroK -
  H7H20_RS18295 pilQ 3772720..3774885 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  H7H20_RS18300 pilP 3774953..3775480 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  H7H20_RS18305 pilO 3775480..3776232 (-) 753 WP_196612760.1 type 4a pilus biogenesis protein PilO Machinery gene
  H7H20_RS18310 pilN 3776229..3776870 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  H7H20_RS18315 pilM 3776870..3777928 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  H7H20_RS18320 ponA 3778091..3780646 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28218.00 Da        Isoelectric Point: 4.6475

>NTDB_id=478199 H7H20_RS18305 WP_196612760.1 3775480..3776232(-) (pilO) [Acinetobacter baumannii strain abA1]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPNIGEL

Nucleotide


Download         Length: 753 bp        

>NTDB_id=478199 H7H20_RS18305 WP_196612760.1 3775480..3776232(-) (pilO) [Acinetobacter baumannii strain abA1]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAACATAGGAGAGTTATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

98

0.98
  comO Acinetobacter baylyi ADP1

69.136

97.2

0.672