Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   BKM84_RS01680 Genome accession   NZ_CP071592
Coordinates   320661..323483 (-) Length   940 a.a.
NCBI ID   WP_207499619.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain GB19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315661..328483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BKM84_RS01650 (BKM84_01650) - 316040..317401 (+) 1362 WP_002854208.1 MFS transporter -
  BKM84_RS01655 (BKM84_01655) - 317398..318405 (+) 1008 WP_002894534.1 nucleoside hydrolase -
  BKM84_RS01660 (BKM84_01660) - 318361..318804 (-) 444 WP_002858712.1 YqaA family protein -
  BKM84_RS01665 (BKM84_01665) - 318804..319400 (-) 597 WP_002860300.1 hypothetical protein -
  BKM84_RS01670 (BKM84_01670) - 319381..320088 (-) 708 WP_002894535.1 hypothetical protein -
  BKM84_RS01675 (BKM84_01675) - 320108..320659 (-) 552 WP_002867760.1 hypothetical protein -
  BKM84_RS01680 (BKM84_01680) uvrA 320661..323483 (-) 2823 WP_207499619.1 excinuclease ABC subunit UvrA Machinery gene
  BKM84_RS01685 (BKM84_01685) - 323556..324341 (-) 786 WP_002857375.1 sulfite exporter TauE/SafE family protein -
  BKM84_RS01690 (BKM84_01690) - 324463..324552 (+) 90 WP_042635777.1 hypothetical protein -
  BKM84_RS01695 (BKM84_01695) trpE 324753..326003 (+) 1251 WP_207499621.1 anthranilate synthase component I family protein -
  BKM84_RS01700 (BKM84_01700) trpD 326000..327601 (+) 1602 WP_207499623.1 anthranilate phosphoribosyltransferase -
  BKM84_RS01705 (BKM84_01705) trpF 327588..328187 (+) 600 WP_207499625.1 phosphoribosylanthranilate isomerase -

Sequence

Protein


Download         Length: 940 a.a.        Molecular weight: 105403.86 Da        Isoelectric Point: 8.7364

>NTDB_id=478197 BKM84_RS01680 WP_207499619.1 320661..323483(-) (uvrA) [Campylobacter jejuni subsp. jejuni strain GB19]
MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFGTLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGL
TPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRLASDIEKGLQESFGEIEIEVLNH
EEINLNKHYHFSEHCACFDCKISFVPLEPLSFSFNSPKGACEACDGLGIRYTLDMKKIIDENLSLENGSVKIMYGFNKSY
YYKFLIAFCEQNEIPIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEYMSEKICKD
CGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKLISKPILKEINERLFFLYDVGLGYLSLGRDA
RTISGGEAQRIRIASQIGSGLSGVMYVLDEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKA
GKFGGEVVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPLQNLVAITGVSGSGKSS
LILQTLLPFAQEELNRAKKVKKLGGIQIEGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKA
GRFSFNVKGGRCEKCSGDGEIKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKIKQ
KLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLHFEDVNKLILVLQHLVDLKNSVFVI
EHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVEKVAKEHKKTKSYTGYYLDLELKNARS

Nucleotide


Download         Length: 2823 bp        

>NTDB_id=478197 BKM84_RS01680 WP_207499619.1 320661..323483(-) (uvrA) [Campylobacter jejuni subsp. jejuni strain GB19]
ATGAACGATACCATAAAAATCATTGGTGCAAGAGAAAATAACCTAAAAAATATCCACCTTGAAATTCCCAAAAACAAACT
CATTGTTTTTACAGGACTGAGTGGGAGTGGAAAATCAACCCTTGCTTTTGGCACTCTTTATGCCGAGGGACAACGCCGTT
ACATAGAAAGTTTAAGTGCTTATGCCAGACAATTTTTAGATAAGGTGGGCAAACCTGATGTCGATAAAATCGAAGGTTTA
ACTCCAGCCATTGCTATAGATCAAAAAACCACTTCTAAAAATCCACGCTCTACTGTAGGAACCATCACTGAAATTTATGA
TTATCTAAGACTTTTATATGCAAGAGTTGGCATTCAACATTGTCATCAATGTGGACAAAAAATCTCATCTATGAGTGCAA
GTGATATAGTCAGTGAAATTTTAAAATTTCCAAAAGGTGCAAAAATCATCATCTACGCTCCACTCATACGAGAAAAAAAA
GGAACTTATGCAGATTTACTTGAAAATTTACGCAACAAAGGCTATGTAAGAGCTCAAATTGATGGAGTTTTGGTAAGACT
TGATGAAGAAATTGAACTGGCCAAAACCAAAAAACACACCATTAAACTTGTCATAGATAGGCTTGAAATTCAAGAAGATT
TACTTTCTCGTCTTGCAAGCGATATAGAAAAAGGCTTACAAGAAAGCTTTGGAGAAATAGAAATAGAAGTTTTAAATCAT
GAGGAAATAAACCTTAATAAACACTATCATTTTAGCGAACACTGCGCTTGTTTTGATTGTAAAATTTCCTTTGTTCCACT
CGAGCCTTTAAGCTTTTCTTTTAATTCTCCAAAAGGAGCATGTGAAGCTTGCGATGGACTTGGAATTCGTTATACTTTAG
ATATGAAAAAAATCATCGATGAAAATTTAAGTCTCGAAAACGGTTCTGTTAAAATCATGTATGGTTTTAATAAAAGTTAT
TATTATAAATTCCTAATCGCCTTTTGCGAACAAAATGAAATTCCTATCAAAATACCTTTTATGCAATTAAACGAAGTACA
AAAACGTCTTGTATTGTATGGTAATGCCAAAACTATAGAATTTCTTTGGAAAAGAAATCGCCTAAAACGCACTTTTGAAG
GCGTGGTTAAAATGGCTTATGAAATGCTAAAAGATGAAAAAGATTTAGCCGAATATATGAGTGAAAAAATTTGTAAAGAC
TGCGGTGGGCATCGTTTAAAACCCGAAAGTTTAGCCGTGAAAGTAGCCAAAAAAGGCTTGGGTGAAATTTTAGATATGAG
CATAGAAGATAGCACGGCCTTTTTTGCAGATGAGAAAAATTTTTCTTATTTAAGCGAGCAACAAAAACTTATTTCTAAAC
CTATCCTAAAAGAAATCAACGAAAGATTGTTTTTCTTGTATGATGTGGGGCTAGGTTATCTTTCTTTAGGGCGCGATGCA
AGAACGATTAGTGGGGGTGAAGCACAAAGAATCCGCATAGCTTCACAAATTGGCAGTGGTTTAAGCGGAGTGATGTATGT
CTTAGATGAGCCTAGCATAGGACTTCATGAAAGAGATACTGCAAAACTGATTAAAACTTTAAGAAATTTACAACAAAAGG
GCAATACCCTAATTGTCGTAGAGCATGATAAAATGACCATAGAAGAAGCAGATTTTATTGTAGATATTGGTCCAAAAGCA
GGAAAATTTGGGGGTGAGGTTGTATTTAGTGGAACTTATAAAGAACTTTTAAAAAGCAAAAGCGAAACTGCACTTTATAT
GAATGGTAAAAAACAAATTTCACAACTTCAAAACAGAACACAGAAAGAATGGCTTGAGCTTAAAAATGTAAATATTAACA
ATATCCAAGATTTAAGCGTAAAATTTCCTTTGCAAAATTTAGTCGCTATAACAGGAGTTTCAGGTTCTGGAAAAAGCTCT
TTGATACTTCAAACCCTACTTCCTTTTGCACAAGAGGAATTAAACCGTGCGAAAAAAGTTAAAAAACTTGGCGGAATACA
AATAGAAGGACTTGAAAAACTTGATAAAGTCATTTATCTTGATCAAAGCCCAATTGGGCGCACACCACGTTCAAATCCTG
CCACCTATACAGGTGCTATGGATGAAATCAGAAATCTTTTTGCCGCCACTAAAGAAGCCAAAATGCGTGGTTATAAAGCC
GGACGCTTTTCTTTTAATGTCAAGGGTGGAAGATGTGAGAAATGTAGCGGAGATGGAGAAATCAAAATAGAAATGCATTT
TTTACCTGATGTTATGGTAGTTTGTGATACTTGCGGGGGCAAACGCTACAATGATGCCACGCTAGAAATCAAATATAAAG
GCAAAAATATCAGTGAAATTTTAAATATGAGTGTTTTAGAAGCGAGTGAATTTTTTACAGCCGTTCCTAAAATCAAACAA
AAATTAGATACTCTAGTAAAAGTGGGTTTAGATTATCTAACCCTAGGACAAAATGCCACCACCTTAAGTGGAGGTGAAGC
ACAAAGAATCAAACTTGCTAAAGAACTAAGCCGTAGCGATACAGGAAAAACGCTTTATATACTTGATGAACCTACAACAG
GACTGCATTTTGAAGATGTCAATAAACTCATCTTAGTTTTACAACATTTGGTTGATCTTAAAAATTCTGTTTTTGTGATA
GAACATAATTTAGATGTGATTAAAAATGCTGATTATATCATCGATATGGGGCCTGAAGGCGGAGTTAAAGGTGGAAAAGT
TATAAGCACAGGAAGCGTGGAAAAAGTCGCTAAAGAGCATAAGAAAACAAAATCCTATACAGGATATTATTTAGATCTAG
AGCTTAAAAACGCAAGGAGTTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-386)

ABC transporter (ABC_tran)

(616-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

51.84

100

0.524
  uvrA Streptococcus pneumoniae TIGR4

51.84

100

0.524
  uvrA Streptococcus pneumoniae D39

51.84

100

0.524