Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H7H20_RS18160 Genome accession   NZ_CP060732
Coordinates   3741797..3742279 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain abA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3736797..3747279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7H20_RS18125 - 3736903..3737937 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  H7H20_RS18130 - 3738052..3738993 (+) 942 WP_085916958.1 triacylglycerol lipase -
  H7H20_RS18135 rplS 3739046..3739414 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  H7H20_RS18140 trmD 3739623..3740363 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H7H20_RS18145 rimM 3740409..3740957 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  H7H20_RS18150 rpsP 3740977..3741228 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  H7H20_RS18155 pilE 3741375..3741800 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  H7H20_RS18160 pilY2 3741797..3742279 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  H7H20_RS18165 pilY1 3742292..3746146 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  H7H20_RS18170 pilX 3746158..3746976 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=478190 H7H20_RS18160 WP_001046420.1 3741797..3742279(-) (pilY2) [Acinetobacter baumannii strain abA1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=478190 H7H20_RS18160 WP_001046420.1 3741797..3742279(-) (pilY2) [Acinetobacter baumannii strain abA1]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431