Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H7H20_RS18170 Genome accession   NZ_CP060732
Coordinates   3746158..3746976 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain abA1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3741158..3751976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7H20_RS18155 pilE 3741375..3741800 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  H7H20_RS18160 pilY2 3741797..3742279 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  H7H20_RS18165 pilY1 3742292..3746146 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  H7H20_RS18170 pilX 3746158..3746976 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7H20_RS18175 pilW 3746973..3747974 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  H7H20_RS18180 pilV 3747975..3748535 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  H7H20_RS18185 fimU 3748529..3749002 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7H20_RS18190 ispH 3749172..3750122 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7H20_RS18195 gmk 3750245..3750874 (+) 630 WP_000015937.1 guanylate kinase -
  H7H20_RS18200 rpoZ 3750947..3751225 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H7H20_RS18205 - 3751264..3751393 (+) 130 Protein_3572 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=478192 H7H20_RS18170 WP_000149374.1 3746158..3746976(-) (pilX) [Acinetobacter baumannii strain abA1]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=478192 H7H20_RS18170 WP_000149374.1 3746158..3746976(-) (pilX) [Acinetobacter baumannii strain abA1]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993