Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   NMBB_RS09230 Genome accession   NC_017505
Coordinates   1762327..1765536 (-) Length   1069 a.a.
NCBI ID   WP_014575521.1    Uniprot ID   -
Organism   Neisseria meningitidis alpha710     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1757327..1770536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBB_RS09210 (NMBB_1967) mtrC 1757778..1759016 (-) 1239 WP_002224350.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  NMBB_RS14990 - 1759172..1759330 (-) 159 WP_162051245.1 hypothetical protein -
  NMBB_RS09215 (NMBB_1968) mtrR 1759420..1760052 (+) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  NMBB_RS09220 (NMBB_1969) - 1760145..1760357 (-) 213 WP_002242936.1 hypothetical protein -
  NMBB_RS09225 (NMBB_1970) mtrF 1760689..1762257 (+) 1569 WP_002218865.1 AbgT family antimetabolite efflux transporter MtrF -
  NMBB_RS09230 (NMBB_1971) recC 1762327..1765536 (-) 3210 WP_014575521.1 exodeoxyribonuclease V subunit gamma Machinery gene
  NMBB_RS09235 (NMBB_1972) - 1765638..1767047 (-) 1410 WP_002222104.1 PepSY domain-containing protein -
  NMBB_RS15345 - 1767249..1767597 (-) 349 Protein_1728 cytochrome c5 family protein -
  NMBB_RS09240 (NMBB_1974) ccoP 1767706..1768584 (-) 879 Protein_1729 cytochrome-c oxidase, cbb3-type subunit III -
  NMBB_RS09245 (NMBB_1975) - 1768608..1768778 (-) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  NMBB_RS09250 (NMBB_1976) ccoO 1768783..1769394 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120845.44 Da        Isoelectric Point: 4.6746

>NTDB_id=47801 NMBB_RS09230 WP_014575521.1 1762327..1765536(-) (recC) [Neisseria meningitidis alpha710]
MFYLYQSNRLETLAALFARIQKVKPLKSVLQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILS
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGSRDTLLHALQTDIQNLDMPSEKA
GNINTDDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYTLECLSDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWQQPATVGEWVARCRDLLETLFQTEADDQK
AVQNLENEWVKWQAETELAQFSGQLPPHTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAEIYIEARREGQDFSQTAARIRAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLPYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIA
QDGALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTFAAAEKKEEAGAA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=47801 NMBB_RS09230 WP_014575521.1 1762327..1765536(-) (recC) [Neisseria meningitidis alpha710]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGTTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTACCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGTCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCGCCTGAAGTGATGCGCTGGCGGCTGTTGGATTTGTTCCGCAGCGAGGCATTTCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCGGATTATCAGCTTGCTGGCC
AGCTTGCAGACATATTTGACCAATACCTCGTGTATCGTCCGCAGTGGATAGACGCGTGGCAGCAGGGCAGGATACTCAGT
TTGGGCGACGATGAAATCTGGCAGTCCAAACTGTGGCGTTATCTTGATGACGGCAGGCAGAGCGCGCCGCACCGTGTTGC
GTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGATGTGTTCGTGTTTGCACTCAATCCGAGTGGGATG
TATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGAGAAACGCCGGTGT
TTGAAGAAGGCAGCCGCGATACGCTTTTGCACGCCCTGCAAACCGATATCCAAAACTTGGATATGCCGTCTGAAAAAGCG
GGAAATATTAATACGGACGACGGATCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAACTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATAGCCGTATTAACCCCGAACATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCAGACGTGAAA
ATCAGCCGCCGACAACCGTTTTTTTATACATTGGAATGCCTGTCCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCACCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAATCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCCTCCTCGAAACCCTGTCGGATATTGTACGGATATGGCAGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAACCGAAGCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCC
GCACACCGTCATCCGCCACATCCGCCGCTTTCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCCTTTAAAGTCATCTGTCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGATGACGACCGCTACCT
GTTCCTCGAAGCCCTCATCAGCGCGCGTGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGC
TTGCCCCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATCGGTAGTCGCCAACTTGCACAA
AACTGGATAGAACAGCATCCGCTGCAAGCCTTTTCACGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCACCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGTTTCTGGCGCAACCCCGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAATCTATATTGAGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGCATCAGGGCGGAAAGCCTGCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGT
CCCAAACTTCCTCCGCTGCCCTACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTTTGTTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACGGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ATTACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGTTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGCAGCCTGA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(778-997)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.452

100

0.935

Multiple sequence alignment