Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H9L41_RS04065 Genome accession   NZ_CP060704
Coordinates   977394..977705 (+) Length   103 a.a.
NCBI ID   WP_028445420.1    Uniprot ID   -
Organism   Chitinimonas koreensis strain R2A43-10     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 972394..982705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9L41_RS04035 (H9L41_04035) rpsT 973590..973853 (+) 264 WP_028445416.1 30S ribosomal protein S20 -
  H9L41_RS04040 (H9L41_04040) - 973959..974726 (-) 768 WP_028445417.1 helix-turn-helix transcriptional regulator -
  H9L41_RS04045 (H9L41_04045) - 974846..975490 (+) 645 WP_187523684.1 alkaline phytoceramidase -
  H9L41_RS04050 (H9L41_04050) - 975469..975654 (+) 186 WP_187523685.1 hypothetical protein -
  H9L41_RS04055 (H9L41_04055) - 975709..976044 (-) 336 WP_028445418.1 hypothetical protein -
  H9L41_RS04060 (H9L41_04060) - 976214..977296 (+) 1083 WP_028445419.1 response regulator -
  H9L41_RS04065 (H9L41_04065) comE 977394..977705 (+) 312 WP_028445420.1 helix-hairpin-helix domain-containing protein Machinery gene
  H9L41_RS04070 (H9L41_04070) tsaD 977878..978891 (-) 1014 WP_028445421.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  H9L41_RS04075 (H9L41_04075) - 978897..980078 (-) 1182 WP_028445422.1 class I SAM-dependent rRNA methyltransferase -
  H9L41_RS04080 (H9L41_04080) - 980408..980680 (-) 273 WP_028445423.1 barstar family protein -
  H9L41_RS04085 (H9L41_04085) - 980671..981120 (-) 450 WP_028445424.1 ribonuclease domain-containing protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10582.46 Da        Isoelectric Point: 10.4909

>NTDB_id=477851 H9L41_RS04065 WP_028445420.1 977394..977705(+) (comE) [Chitinimonas koreensis strain R2A43-10]
MKSLFALLFALAPFFCLAAVNVNTATQAELEALKGIGPAKAKAIVDYRSKNGAFKSIDELEKVGGIGKNMLDKLRGELSV
SGASKPAAPAAPAQAKPAAKPAK

Nucleotide


Download         Length: 312 bp        

>NTDB_id=477851 H9L41_RS04065 WP_028445420.1 977394..977705(+) (comE) [Chitinimonas koreensis strain R2A43-10]
ATGAAGTCCCTGTTCGCATTGCTGTTCGCGCTCGCGCCATTTTTTTGCCTGGCTGCTGTTAACGTTAACACTGCAACCCA
GGCCGAACTCGAGGCGCTCAAGGGCATCGGCCCGGCCAAGGCGAAGGCGATCGTCGATTACCGCAGCAAGAACGGCGCGT
TCAAGTCGATCGACGAGCTCGAGAAGGTCGGCGGCATCGGCAAGAACATGCTCGACAAGCTGCGCGGCGAACTGAGCGTA
TCGGGCGCCAGCAAGCCGGCCGCGCCTGCAGCGCCGGCGCAGGCCAAGCCCGCTGCCAAGCCGGCGAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

60.87

89.32

0.544
  comE Neisseria gonorrhoeae MS11

60.87

89.32

0.544
  comE Neisseria gonorrhoeae MS11

60.87

89.32

0.544
  comE Neisseria gonorrhoeae MS11

60.87

89.32

0.544
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.617

78.641

0.398