Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H9Q12_RS10310 Genome accession   NZ_CP060700
Coordinates   2178522..2179028 (+) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain Z0118SP0130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2173522..2184028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q12_RS10290 - 2174585..2175520 (+) 936 WP_015728516.1 ABC transporter ATP-binding protein -
  H9Q12_RS10295 - 2175513..2176322 (+) 810 WP_020220246.1 ABC transporter permease subunit -
  H9Q12_RS10300 sbi 2176376..2177866 (-) 1491 WP_063284542.1 Ig-binding surface protein Sbi/SpsK -
  H9Q12_RS10305 rpsF 2178203..2178499 (+) 297 WP_014614921.1 30S ribosomal protein S6 -
  H9Q12_RS10310 ssbA 2178522..2179028 (+) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  H9Q12_RS10315 rpsR 2179082..2179324 (+) 243 WP_014614919.1 30S ribosomal protein S18 -
  H9Q12_RS13050 - 2179515..2180096 (+) 582 WP_233275663.1 Abi family protein -
  H9Q12_RS13055 - 2180093..2180233 (+) 141 WP_233275704.1 Abi family protein -
  H9Q12_RS12965 - 2180230..2180604 (+) 375 WP_157980673.1 Abi family protein -
  H9Q12_RS10325 - 2180818..2182809 (-) 1992 WP_014614918.1 catalase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=477804 H9Q12_RS10310 WP_014614920.1 2178522..2179028(+) (ssbA) [Staphylococcus pseudintermedius strain Z0118SP0130]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=477804 H9Q12_RS10310 WP_014614920.1 2178522..2179028(+) (ssbA) [Staphylococcus pseudintermedius strain Z0118SP0130]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGGAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAATGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381