Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | NMV_RS15395 | Genome accession | NC_017501 |
| Coordinates | 2138475..2138939 (-) | Length | 154 a.a. |
| NCBI ID | WP_014574275.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis 8013 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2128693..2138774 | 2138475..2138939 | flank | -299 |
Gene organization within MGE regions
Location: 2128693..2138939
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMV_RS10905 (NMV_2208) | - | 2128693..2129685 (+) | 993 | WP_014574273.1 | DNA cytosine methyltransferase | - |
| NMV_RS10910 (NMV_2209) | - | 2129790..2133200 (+) | 3411 | WP_048813560.1 | DUF3418 domain-containing protein | - |
| NMV_RS10915 (NMV_2210) | - | 2133223..2133645 (-) | 423 | WP_002214928.1 | very short patch repair endonuclease | - |
| NMV_RS10920 (NMV_2211) | - | 2133649..2135295 (-) | 1647 | WP_014574274.1 | TIGR02391 family protein | - |
| NMV_RS10925 (NMV_2212) | - | 2135309..2136364 (-) | 1056 | WP_002221681.1 | DNA cytosine methyltransferase | - |
| NMV_RS10935 | - | 2136770..2137242 (-) | 473 | Protein_2049 | transposase | - |
| NMV_RS16385 (NMV_2215) | - | 2137580..2137848 (+) | 269 | Protein_2050 | 5'-nucleotidase | - |
| NMV_RS10945 (NMV_2216) | comP | 2137938..2138387 (-) | 450 | WP_002218144.1 | type IV pilin protein | Machinery gene |
| NMV_RS15395 (NMV_2217) | comE | 2138475..2138939 (-) | 465 | WP_014574275.1 | ComEA family DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16503.77 Da Isoelectric Point: 10.9585
>NTDB_id=47765 NMV_RS15395 WP_014574275.1 2138475..2138939(-) (comE) [Neisseria meningitidis 8013]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPAIPAAKK
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPAIPAAKK
Nucleotide
Download Length: 465 bp
>NTDB_id=47765 NMV_RS15395 WP_014574275.1 2138475..2138939(-) (comE) [Neisseria meningitidis 8013]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
90.984 |
79.221 |
0.721 |
| comE | Neisseria gonorrhoeae MS11 |
90.984 |
79.221 |
0.721 |
| comE | Neisseria gonorrhoeae MS11 |
90.984 |
79.221 |
0.721 |
| comE | Neisseria gonorrhoeae MS11 |
90.984 |
79.221 |
0.721 |