Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   H7789_RS04575 Genome accession   NZ_CP060646
Coordinates   910204..911514 (+) Length   436 a.a.
NCBI ID   WP_136260995.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1026     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 905204..916514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7789_RS04560 (H7789_04555) phoU 905796..906449 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  H7789_RS04565 (H7789_04560) - 906654..909191 (+) 2538 WP_115230507.1 M1 family metallopeptidase -
  H7789_RS04570 (H7789_04565) ciaR 909537..910211 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  H7789_RS04575 (H7789_04570) ciaH 910204..911514 (+) 1311 WP_136260995.1 sensor histidine kinase Regulator
  H7789_RS04580 (H7789_04575) rpsT 911639..911887 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  H7789_RS04585 (H7789_04580) coaA 911941..912861 (-) 921 WP_010922353.1 type I pantothenate kinase -
  H7789_RS04590 (H7789_04585) - 913129..913722 (+) 594 WP_002989699.1 class I SAM-dependent methyltransferase -
  H7789_RS04595 (H7789_04590) - 914325..914714 (+) 390 WP_002984531.1 cytidine deaminase -
  H7789_RS04600 (H7789_04595) - 914808..915860 (+) 1053 WP_002989701.1 BMP family protein -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50085.63 Da        Isoelectric Point: 9.2692

>NTDB_id=477368 H7789_RS04575 WP_136260995.1 910204..911514(+) (ciaH) [Streptococcus pyogenes strain TSPY1026]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKRRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQS
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=477368 H7789_RS04575 WP_136260995.1 910204..911514(+) (ciaH) [Streptococcus pyogenes strain TSPY1026]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGATAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAACGCCGGTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAATTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCACTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAGC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.666

100

0.578

  ciaH Streptococcus pneumoniae Rx1

51.142

100

0.514

  ciaH Streptococcus pneumoniae D39

51.142

100

0.514

  ciaH Streptococcus pneumoniae R6

51.142

100

0.514

  ciaH Streptococcus pneumoniae TIGR4

51.142

100

0.514