Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   NMV_RS03100 Genome accession   NC_017501
Coordinates   627665..630874 (+) Length   1069 a.a.
NCBI ID   WP_002258317.1    Uniprot ID   A0A9K2KN41
Organism   Neisseria meningitidis 8013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622665..635874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMV_RS03080 (NMV_0643) ccoO 623812..624423 (+) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -
  NMV_RS03085 (NMV_0644) - 624428..624598 (+) 171 WP_002212597.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  NMV_RS03090 (NMV_0645) ccoP 624622..625953 (+) 1332 Protein_574 cytochrome-c oxidase, cbb3-type subunit III -
  NMV_RS03095 (NMV_0647) - 626155..627564 (+) 1410 WP_014573840.1 PepSY-associated TM helix domain-containing protein -
  NMV_RS03100 (NMV_0648) recC 627665..630874 (+) 3210 WP_002258317.1 exodeoxyribonuclease V subunit gamma Machinery gene
  NMV_RS03105 (NMV_0649) mtrF 630942..632510 (-) 1569 WP_014573841.1 AbgT family antimetabolite efflux transporter MtrF -
  NMV_RS03110 (NMV_0651) - 632844..633056 (+) 213 WP_002242936.1 hypothetical protein -
  NMV_RS03115 (NMV_0652) mtrR 633335..633967 (-) 633 WP_002216625.1 multidrug efflux system transcriptional repressor MtrR -
  NMV_RS15775 - 634057..634215 (+) 159 WP_162051245.1 hypothetical protein -
  NMV_RS03120 (NMV_0653) mtrC 634371..635609 (+) 1239 WP_014573842.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -

Sequence

Protein


Download         Length: 1069 a.a.        Molecular weight: 120705.32 Da        Isoelectric Point: 4.8009

>NTDB_id=47735 NMV_RS03100 WP_002258317.1 627665..630874(+) (recC) [Neisseria meningitidis 8013]
MFYLYQSNRLETLAALFARIQKVKPLKSALQPEQIIVQSQGMRRYLNTCLARDLGVAANLSFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSEAFRNTAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRRLG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLESLSSDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
YWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIESYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTEDDLPLLHDMVADLNVHWGLDGEMRGGTDQLFTWKQA
VERMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAALLETLSDIVRIWRQPATIGEWVARCRDLLETLFQAEADDQK
SVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLIAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELAPSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYATALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQQ
LAWSEPHIGEAWEPAEPFEPQHADQIAETYIEARREGRDFAQTAARIGAESLLPSGELGRLWQQDFQTAAKQIDTAVLNS
PKLPPLSYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAEMRQTFIVQSGETEILAEIA
QDRALQLLSEWMAFFNIGQNRPLPFFAKTSLATAEAFAQKQDWEAALKKAQTAYHGSKVSKGQKDYTEVALVFGNASQNP
LEQPLFENLVRLLADTLAAAEKKEEAGEA

Nucleotide


Download         Length: 3210 bp        

>NTDB_id=47735 NMV_RS03100 WP_002258317.1 627665..630874(+) (recC) [Neisseria meningitidis 8013]
ATGTTTTATCTGTATCAATCCAACCGTCTTGAAACGCTGGCGGCATTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATCGGCTTTACAGCCCGAACAGATTATTGTGCAGAGTCAGGGGATGCGCCGCTATCTCAATACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGTCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGCTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGTGAAGCATTCCGGAATAC
GGCAGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGCGAATCGGCAGATTACCAGCTTGCGGGAC
AGCTTGCGGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGCGGCTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGATGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAGCTGTTGGAATCTTTGAGCAGTGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAACTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
TATTGGGGCAATGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATTTAACTCAGGCAGGGCATCCGCT
GCTCGCTTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAATCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCCTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAACATCGAATCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGTGCGCAGGCATTGCCGTATTCCGTTTCAGACGTGAAA
ATCAGCCGCCGACAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGATAAAGT
GCTTGTGCTTTTAGAAACCGCACCCGTGTTGCGCCGTTTCGGACTGACTGAGGACGATTTGCCGCTTTTGCACGATATGG
TTGCCGATTTGAACGTTCACTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GTAGAACGCATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCCTGTTCGGACGTTTTGCCGCCCTCCTCGAAACCCTGTCGGATATTGTACGGATATGGCGGCAGC
CCGCAACGATCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTCCAAGCTGAAGCCGATGACCAAAAG
TCAGTCCAAAACCTTGAAAACGAATGGGTCAAATGGCAGGCGGAAACAGAATTGGCGCAATTTTCCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGTGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGGAGCCTGCCGTTCAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGATTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGATGACGACCGCTACCT
CTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTCTACCTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAGC
TTGCTCCGTCTTCGCTGTTGGGCGAACTCATCGACACAGTTGCCGCTATGGCGGGCATCGGTAGCCGCCAACTTGCACAA
AACTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTTCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCACCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGATCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCTGTCAAAGTATGGCTTCAGCAGCAG
CTTGCGTGGAGCGAACCCCATATCGGCGAAGCTTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCCGATCAAATCGC
CGAAACCTACATCGAAGCACGGCGCGAAGGACGGGATTTTGCCCAAACCGCCGCCCGCATCGGGGCGGAAAGCCTCCTGC
CGTCGGGAGAGTTGGGCAGACTTTGGCAGCAGGACTTCCAAACCGCTGCCAAACAAATCGACACGGCGGTTTTAAACAGC
CCCAAACTGCCACCGCTTTCATATGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTG
CGGACAAGTGTTTTACGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTCTGCTGGAACACCTGATATTTTGCG
CCGTTATGCCGTCTGAAGCCGAAATGCGGCAAACCTTTATCGTCCAATCCGGAGAAACCGAAATATTGGCGGAAATCGCG
CAAGACAGGGCATTGCAGCTATTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGC
CAAAACCTCGCTTGCCACCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCT
ACCACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCG
CTCGAACAGCCCCTGTTTGAAAACCTCGTCCGTCTGCTTGCCGACACGCTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGG
AGAAGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-997)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

93.732

100

0.937

Multiple sequence alignment