Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   J1G50_RS09510 Genome accession   NZ_CP071489
Coordinates   1922629..1923345 (-) Length   238 a.a.
NCBI ID   WP_021113221.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917629..1928345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS09485 (J1G50_09485) ciaR 1918703..1919374 (-) 672 WP_021111236.1 response regulator Regulator
  J1G50_RS09490 (J1G50_09490) - 1919435..1919800 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  J1G50_RS09495 (J1G50_09495) - 1919969..1921930 (-) 1962 WP_021119361.1 TonB-dependent receptor domain-containing protein -
  J1G50_RS09500 (J1G50_09500) rpmG 1922085..1922255 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  J1G50_RS09505 (J1G50_09505) rpmB 1922267..1922503 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  J1G50_RS09510 (J1G50_09510) radC 1922629..1923345 (-) 717 WP_021113221.1 RadC family protein Machinery gene
  J1G50_RS09515 (J1G50_09515) coaBC 1923515..1924720 (+) 1206 WP_021119360.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  J1G50_RS09520 (J1G50_09520) dut 1924717..1925172 (+) 456 WP_021119359.1 dUTP diphosphatase -
  J1G50_RS09525 (J1G50_09525) slmA 1925181..1925786 (+) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  J1G50_RS09530 (J1G50_09530) - 1925794..1926018 (+) 225 WP_005713165.1 YheU family protein -
  J1G50_RS09535 (J1G50_09535) crp 1926085..1926759 (+) 675 WP_160404950.1 cAMP-activated global transcriptional regulator CRP Regulator
  J1G50_RS09540 (J1G50_09540) - 1927014..1927265 (+) 252 WP_223300025.1 hypothetical protein -
  J1G50_RS09545 (J1G50_09545) - 1927304..1927450 (+) 147 WP_021110348.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27291.45 Da        Isoelectric Point: 4.7438

>NTDB_id=477240 J1G50_RS09510 WP_021113221.1 1922629..1923345(-) (radC) [Glaesserella parasuis strain YHP1815]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=477240 J1G50_RS09510 WP_021113221.1 1922629..1923345(-) (radC) [Glaesserella parasuis strain YHP1815]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATCTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTAATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555