Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   J1G50_RS09485 Genome accession   NZ_CP071489
Coordinates   1918703..1919374 (-) Length   223 a.a.
NCBI ID   WP_021111236.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1913703..1924374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS09465 (J1G50_09465) groL 1914885..1916528 (-) 1644 WP_010787268.1 chaperonin GroEL -
  J1G50_RS09470 (J1G50_09470) - 1916639..1916926 (-) 288 WP_005713186.1 co-chaperone GroES -
  J1G50_RS11785 (J1G50_09475) - 1917132..1917194 (-) 63 Protein_1844 RNA-guided endonuclease TnpB family protein -
  J1G50_RS09480 (J1G50_09480) qseC 1917316..1918716 (-) 1401 WP_164689358.1 quorum sensing histidine kinase QseC -
  J1G50_RS09485 (J1G50_09485) ciaR 1918703..1919374 (-) 672 WP_021111236.1 response regulator Regulator
  J1G50_RS09490 (J1G50_09490) - 1919435..1919800 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  J1G50_RS09495 (J1G50_09495) - 1919969..1921930 (-) 1962 WP_021119361.1 TonB-dependent receptor domain-containing protein -
  J1G50_RS09500 (J1G50_09500) rpmG 1922085..1922255 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  J1G50_RS09505 (J1G50_09505) rpmB 1922267..1922503 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  J1G50_RS09510 (J1G50_09510) radC 1922629..1923345 (-) 717 WP_021113221.1 RadC family protein Machinery gene

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25454.15 Da        Isoelectric Point: 6.0355

>NTDB_id=477239 J1G50_RS09485 WP_021111236.1 1918703..1919374(-) (ciaR) [Glaesserella parasuis strain YHP1815]
MRILLVEDDPLIGEGLKLGLSKSGFSVDWFADGRSGLEALSSAPYDAVVLDLTLPKMDGLEVLQSWRRANQDVPVLILTA
RDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRYGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLEL
FMHNKERVLTRSFIEEKLYTWDDEVSSNALEVHIYNLRQKLGKQFIRTVHGVGYALGKNDEVA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=477239 J1G50_RS09485 WP_021111236.1 1918703..1919374(-) (ciaR) [Glaesserella parasuis strain YHP1815]
ATGCGTATTTTATTAGTTGAAGACGATCCGTTGATCGGTGAAGGGCTAAAACTTGGTTTGAGTAAATCTGGCTTTAGTGT
GGACTGGTTTGCCGATGGCAGATCTGGCTTAGAGGCGTTAAGTTCTGCTCCTTATGATGCCGTTGTTCTCGATCTTACCT
TGCCTAAAATGGACGGACTTGAGGTGTTACAAAGTTGGCGACGGGCAAATCAAGATGTGCCAGTGCTAATTTTGACTGCA
AGAGATACCCTTGATGAACGTATCACTGGGCTACAACGTGGTGCAGATGATTATCTCTGTAAACCTTTTGCTCTCGCAGA
AGTTGTAGCTCGTTTACAAGCTTTGATCCGCCGTCGTTATGGGCATACCAACCCCGTGATTGAACATAGTTTAGTTAAAT
TCGATCCAAACCAACGCAAAGTGTTTCTTCGGGAGCAAGAAGTCACCCTAACCACACGAGAGTACAATTTACTTGAGCTA
TTTATGCACAATAAAGAGCGTGTTCTCACCCGTTCTTTTATTGAAGAGAAACTCTATACTTGGGACGATGAAGTCAGTAG
CAACGCCCTTGAAGTCCATATCTACAATTTACGCCAAAAACTCGGAAAACAGTTTATTCGTACCGTACACGGTGTTGGCT
ATGCCTTAGGAAAAAACGATGAAGTTGCTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

35.683

100

0.363
  ciaR Streptococcus pneumoniae D39

35.683

100

0.363
  ciaR Streptococcus pneumoniae R6

35.683

100

0.363
  ciaR Streptococcus pneumoniae TIGR4

35.683

100

0.363