Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   J1G50_RS08100 Genome accession   NZ_CP071489
Coordinates   1646413..1648428 (+) Length   671 a.a.
NCBI ID   WP_160404883.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1815     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1641413..1653428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G50_RS08085 (J1G50_08085) - 1641640..1642671 (-) 1032 WP_021113358.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  J1G50_RS08090 (J1G50_08090) - 1642684..1643574 (-) 891 WP_021112024.1 ABC transporter permease subunit -
  J1G50_RS08095 (J1G50_08095) glnD 1643658..1646252 (-) 2595 WP_234888259.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD -
  J1G50_RS08100 (J1G50_08100) uvrB 1646413..1648428 (+) 2016 WP_160404883.1 excinuclease ABC subunit UvrB Machinery gene
  J1G50_RS08105 (J1G50_08105) - 1648473..1648928 (-) 456 WP_005710562.1 YcgN family cysteine cluster protein -
  J1G50_RS08110 (J1G50_08110) - 1648928..1649113 (-) 186 WP_005710560.1 heavy metal-binding domain-containing protein -
  J1G50_RS08115 (J1G50_08115) - 1649121..1649714 (-) 594 WP_020997260.1 XTP/dITP diphosphatase -
  J1G50_RS08120 (J1G50_08120) - 1649836..1650771 (-) 936 WP_010785995.1 Kdo(2)-lipid IV(A) acyltransferase -
  J1G50_RS08125 (J1G50_08125) - 1650771..1651085 (-) 315 WP_234888258.1 DUF4298 domain-containing protein -
  J1G50_RS08130 (J1G50_08130) hpf 1651256..1651582 (+) 327 WP_005710552.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  J1G50_RS08135 (J1G50_08135) - 1651856..1652482 (-) 627 WP_164689386.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 76548.43 Da        Isoelectric Point: 5.4317

>NTDB_id=477234 J1G50_RS08100 WP_160404883.1 1646413..1648428(+) (uvrB) [Glaesserella parasuis strain YHP1815]
MSKQGKPFILHSPFKPSGDQPTAIAKLIEGLNDGLAHQTLLGVTGSGKTFTIANVIATLNRPAMVLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGEMIDQRKILSRLAELQYTRNDQAFQRATFRVRGEVIDIFPAESDGVALRVELFDDEIENLSLFDPLTGHNLGR
VPRYTIYPKTHYVTPRDRILEAIEQIKKELAERRTYFIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPSDGLLIIDESHVTVPQIGGMFRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQTIYVSATPG
PYELEKNPDVIDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDERVLVTTLTKKMAEDLTDYLDEHGVRVRYLHS
DIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRIT
NSMQKAITETERRREKQQKYNEEHGIVPQALNKKVGELLDIGQTDKPKRSKKSAKSSDDQTAYTPKSRKELEKELKVLEQ
QMRDFAKDLEFEKAAAVRDKIHQLKAYLLEL

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=477234 J1G50_RS08100 WP_160404883.1 1646413..1648428(+) (uvrB) [Glaesserella parasuis strain YHP1815]
ATGAGCAAACAGGGTAAACCATTTATTTTACATTCCCCCTTCAAACCCTCAGGCGACCAACCGACTGCGATTGCCAAATT
AATCGAGGGATTGAATGATGGCTTGGCACATCAAACCTTGCTAGGTGTAACAGGATCGGGCAAAACCTTTACCATTGCCA
ATGTGATTGCGACTTTAAACCGTCCAGCAATGGTACTTGCCCCGAACAAAACCCTTGCGGCACAACTTTATGCCGAGATG
AAAGCCTTTTTCCCTGAAAATGCGGTGGAGTATTTCGTTTCCTACTACGATTACTATCAGCCCGAAGCCTATGTGCCTGC
TAGCGATACTTTTATTGAAAAAGATGCTTCTATTAATGAGCAGATCGAACAGATGCGACTGTCTGCCACCAAATCTTTTT
TAGAAAGACGGGATACGATTGTAGTCGCATCGGTGTCGGCAATTTACGGCTTGGGGGATGTTGATGCCTATATGCAGATG
ATGTTACATCTGCAAGTGGGGGAAATGATCGACCAACGCAAAATTCTCTCTCGCCTTGCTGAATTACAATATACTCGTAA
CGATCAAGCCTTTCAGCGGGCGACTTTCCGTGTGCGTGGTGAAGTGATTGATATTTTCCCTGCCGAATCGGACGGTGTCG
CTCTGCGTGTGGAACTGTTTGATGATGAAATCGAAAATCTGTCCTTATTCGATCCGCTTACAGGGCATAATTTAGGGCGA
GTTCCCCGTTATACGATCTACCCAAAAACTCACTACGTTACTCCGAGAGATCGGATTTTAGAAGCGATTGAGCAGATCAA
AAAAGAACTTGCCGAGCGTCGAACTTACTTTATCAAAGAGAATAAATTACTCGAAGAACAGCGGATCGCCCAGCGTACCC
AGTTTGACATTGAGATGATGAACGAGTTGGGCTACTGCTCAGGCATTGAAAACTACTCACGTTATTTATCGGGCAGAAAA
GAGGGTGAACCGCCACCGACCTTGTTTGATTATATGCCGTCTGATGGCTTGCTGATTATTGATGAGTCCCACGTTACCGT
GCCACAAATCGGCGGTATGTTTAGGGGCGACCGAGCAAGAAAAGAAACTTTGGTGCAATACGGTTTCCGTTTGCCATCTG
CTTTAGACAACCGTCCGTTGCGTTTTGAAGAGTTTGAACGCTTATCGCCACAGACAATCTATGTATCGGCAACCCCTGGA
CCTTACGAATTAGAGAAAAATCCTGATGTAATCGACCAAGTGGTTCGTCCGACTGGCTTGTTAGATCCGATTATCGAAGT
TCGCCCTGTGGCAACGCAAGTTGATGATTTATTGTCAGAAATTCATAAGCGTGTGGCGGTAGATGAACGAGTGCTAGTCA
CCACGCTGACAAAAAAAATGGCGGAAGATTTAACGGACTACCTAGACGAACACGGCGTACGAGTGCGTTATCTACATAGC
GATATTGACACAGTCGAGCGGGTTGAAATTATCCACGATTTGCGAATGGGAATGTTTGATGTGTTAGTGGGGATCAACCT
ACTGCGAGAAGGTTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGACGCTGACAAAGAAGGCTTTTTGCGTTCCG
AACGCTCTTTAATCCAAACCATCGGGCGTGCTGCCCGAAACCTCAACGGCAAAGCGATTTTATACGGCGACCGTATTACC
AATTCAATGCAAAAAGCGATCACCGAAACTGAACGCCGTCGAGAGAAACAACAAAAATACAACGAAGAACACGGCATTGT
GCCACAAGCATTGAACAAAAAAGTCGGCGAGTTGCTTGATATTGGGCAGACGGATAAACCGAAACGCAGTAAGAAATCTG
CAAAATCAAGCGATGATCAGACCGCTTACACGCCGAAATCTCGCAAAGAGTTAGAAAAAGAACTGAAAGTGCTTGAACAA
CAGATGAGAGATTTTGCTAAAGATCTTGAGTTTGAAAAAGCGGCTGCGGTGAGGGATAAGATTCATCAGTTGAAGGCGTA
TTTGTTAGAACTTTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(162-252)

Helicase conserved C-terminal domain (Helicase_C)

(437-546)

Ultra-violet resistance protein B (UvrB)

(554-595)

UvrB/uvrC motif (UVR)

(632-666)

Type III restriction enzyme, res subunit (ResIII)

(17-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.663

98.212

0.566
  uvrB Streptococcus pneumoniae R6

57.663

98.212

0.566
  uvrB Streptococcus pneumoniae D39

57.663

98.212

0.566