Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaH   Type   Regulator
Locus tag   H7793_RS04640 Genome accession   NZ_CP060642
Coordinates   899788..901098 (+) Length   436 a.a.
NCBI ID   WP_002989693.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY1312     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 894788..906098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7793_RS04625 (H7793_04625) phoU 895380..896033 (+) 654 WP_002984514.1 phosphate signaling complex protein PhoU -
  H7793_RS04630 (H7793_04630) - 896238..898775 (+) 2538 WP_002989692.1 M1 family metallopeptidase -
  H7793_RS04635 (H7793_04635) ciaR 899121..899795 (+) 675 WP_002984519.1 response regulator transcription factor Regulator
  H7793_RS04640 (H7793_04640) ciaH 899788..901098 (+) 1311 WP_002989693.1 sensor histidine kinase Regulator
  H7793_RS04645 (H7793_04645) rpsT 901223..901471 (-) 249 WP_009881183.1 30S ribosomal protein S20 -
  H7793_RS04650 (H7793_04650) coaA 901525..902445 (-) 921 WP_002989697.1 type I pantothenate kinase -
  H7793_RS04655 (H7793_04655) - 902713..903305 (+) 593 Protein_866 class I SAM-dependent methyltransferase -
  H7793_RS04660 (H7793_04660) - 903956..904345 (+) 390 WP_002984531.1 cytidine deaminase -
  H7793_RS04665 (H7793_04665) - 904439..905491 (+) 1053 WP_002989701.1 BMP family protein -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50119.65 Da        Isoelectric Point: 9.0641

>NTDB_id=477152 H7793_RS04640 WP_002989693.1 899788..901098(+) (ciaH) [Streptococcus pyogenes strain TSPY1312]
MNKLKKEILSDNYNHFFHFFAVFTGIFVIMTIIILQIMRFGVYSSVDSSLVSVSNNASSYANRTMARISSFYFDTENNII
KALPDSDSSKLLGTPAANTDIILFSANGTILNAFDAFSNYQNFHLDKYRLGSIETTSLMNFYGQEEKYHTITVRVHIKNY
PAVAYMMAVVNVEQLDRANERYERIIIIVMSVFWLISILASIYLAKWSRKPILESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNETILENSEHLASSLDEVRNMRILTTNLLNLARRDDGINPQWTHLDTDFFNAIFENYELVAKEYGKIFYFQN
QVNRSLRMDKALLKQLITILFDNAIKYTDKNGIIEIIVKTTDKNLLISVIDNGPGITDEEKKKIFDRFYRVDKARTRQTG
GFGLGLALAQQIVMSLKGNITVKDNDPKGSIFEVKL

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=477152 H7793_RS04640 WP_002989693.1 899788..901098(+) (ciaH) [Streptococcus pyogenes strain TSPY1312]
ATGAATAAATTAAAAAAAGAGATTTTATCAGATAACTATAACCACTTTTTTCATTTTTTTGCGGTTTTTACAGGTATTTT
TGTCATTATGACTATTATTATCTTACAGATTATGCGGTTTGGCGTTTATTCGTCAGTTGACAGTAGTTTAGTTTCTGTTA
GTAATAATGCAAGTAGCTATGCTAATCGTACGATGGCTAGAATATCTTCTTTTTACTTTGATACTGAAAATAACATTATT
AAGGCGCTGCCTGATTCAGATAGTTCTAAGTTATTAGGAACGCCTGCAGCTAATACAGATATCATTTTGTTTAGTGCTAA
TGGAACAATTTTAAATGCTTTTGATGCGTTTTCTAACTATCAAAATTTTCATTTAGATAAATACCGTTTGGGGAGTATTG
AAACCACCAGTTTAATGAATTTTTATGGACAAGAAGAAAAATACCATACGATAACTGTAAGGGTTCATATCAAAAATTAT
CCTGCAGTTGCCTATATGATGGCAGTAGTAAATGTGGAACAATTAGACCGCGCTAATGAACGTTACGAGCGCATTATTAT
TATAGTTATGAGTGTTTTTTGGCTAATTTCTATTTTAGCAAGTATTTATTTAGCCAAGTGGAGCAGAAAACCTATTTTAG
AAAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCTAGTCATGAACTAAGGACCCCTTTGGCGGTCTTACAGAATCGT
CTGGAATCGCTTTTTCGTAAGCCCAACGAAACGATATTAGAAAATAGTGAGCATCTCGCTTCTAGTTTAGACGAGGTTCG
CAACATGCGCATCTTAACAACTAATTTATTAAATTTAGCAAGACGAGATGATGGCATTAATCCACAGTGGACTCATTTAG
ATACAGATTTTTTTAATGCTATTTTTGAGAATTATGAACTAGTTGCTAAAGAATATGGAAAAATATTTTATTTTCAGAAC
CAAGTCAATAGATCGTTAAGAATGGATAAGGCTTTACTAAAACAATTAATAACGATTTTATTTGACAATGCTATTAAATA
TACAGATAAAAATGGTATTATTGAAATTATAGTGAAAACAACGGACAAAAATTTATTAATTTCTGTTATTGATAATGGTC
CAGGGATAACAGATGAAGAAAAGAAAAAGATTTTTGATCGTTTTTATCGAGTTGACAAAGCTAGAACACGGCAAACAGGT
GGATTTGGCTTGGGGTTGGCTTTAGCTCAGCAAATCGTGATGTCTTTAAAAGGAAATATTACAGTAAAGGATAATGATCC
TAAAGGTAGTATTTTTGAAGTCAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.895

100

0.58

  ciaH Streptococcus pneumoniae Rx1

51.37

100

0.516

  ciaH Streptococcus pneumoniae D39

51.37

100

0.516

  ciaH Streptococcus pneumoniae R6

51.37

100

0.516

  ciaH Streptococcus pneumoniae TIGR4

51.37

100

0.516