Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J1G47_RS01125 Genome accession   NZ_CP071487
Coordinates   213198..214448 (-) Length   416 a.a.
NCBI ID   WP_005711769.1    Uniprot ID   B8F823
Organism   Glaesserella parasuis strain YHP1818     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 208198..219448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS01105 (J1G47_01105) pilB 208668..210053 (+) 1386 WP_010787006.1 GspE/PulE family protein Machinery gene
  J1G47_RS01110 (J1G47_01110) pilC 210046..211242 (+) 1197 WP_005711777.1 type II secretion system F family protein Machinery gene
  J1G47_RS01115 (J1G47_01115) - 211239..211907 (+) 669 WP_010787005.1 prepilin peptidase -
  J1G47_RS01120 (J1G47_01120) dapE 211991..213124 (+) 1134 WP_207326695.1 succinyl-diaminopimelate desuccinylase -
  J1G47_RS01125 (J1G47_01125) clpX 213198..214448 (-) 1251 WP_005711769.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  J1G47_RS01130 (J1G47_01130) clpP 214455..215036 (-) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J1G47_RS01135 (J1G47_01135) - 215137..215526 (+) 390 WP_005711765.1 SufE family protein -
  J1G47_RS01140 (J1G47_01140) - 215604..216260 (-) 657 WP_234701750.1 SLC13 family permease -
  J1G47_RS01145 (J1G47_01145) - 216735..217355 (+) 621 WP_207326696.1 L-threonylcarbamoyladenylate synthase -
  J1G47_RS01150 (J1G47_01150) rluB 217523..218542 (+) 1020 WP_015940023.1 23S rRNA pseudouridine(2605) synthase RluB -
  J1G47_RS01155 (J1G47_01155) - 218855..219118 (+) 264 Protein_219 transposase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45833.48 Da        Isoelectric Point: 5.1845

>NTDB_id=477144 J1G47_RS01125 WP_005711769.1 213198..214448(-) (clpX) [Glaesserella parasuis strain YHP1818]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIDESYALINGTDEPLIDENEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=477144 J1G47_RS01125 WP_005711769.1 213198..214448(-) (clpX) [Glaesserella parasuis strain YHP1818]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGTGGAAAGCGTCGTAATGAAGTCGATGCGTTAATTGAAGGTAC
AGAAGGGCATATTTGTAACGAATGTATTGATGAGTCTTATGCGTTAATTAATGGAACAGACGAACCATTGATTGATGAAA
ATGAAGCTGAGAGCCAAGATGTGTTAGGCAATGTGCCTACCCCACACGAAATTCACGCACATTTAGATGATTATGTGATC
GGTCAAGAACACGCTAAAAAGGTATTGTCCGTTGCGGTCTATAACCACTACAAACGCTTACGCAATGCACTGTCTGACAA
TAAAGAGAGTGAGGGCGTTGAGTTAGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTGG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAGGCAGGTTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGGGAAGGGGTTCAGC
AAGCGTTGCTGAAATTGATTGAAGGCACTATTGCGAATATCAATCCACAGGGTGGACGCAAACACCCGAAACAAGAAACA
ATTCCAGTCGATACGTCTAAAATTCTCTTTATCTGCGGTGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
AAATACACAAGGCGGAATTGGCTTTAAAGCGGAATTGAAGAAAGATAAAGATCGTCAGGCACTCACTGAATTATTCAAAC
AAGTTGAGCCTGAAGATTTGGTGAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCTTTGTTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCTAAGGTGGAGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F823

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.235

98.317

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.523

98.317

0.536