Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J1G47_RS01090 Genome accession   NZ_CP071487
Coordinates   205661..207037 (-) Length   458 a.a.
NCBI ID   WP_160403706.1    Uniprot ID   -
Organism   Glaesserella parasuis strain YHP1818     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200661..212037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1G47_RS01065 (J1G47_01065) - 200938..201795 (+) 858 WP_005714024.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  J1G47_RS01070 (J1G47_01070) - 202023..202697 (+) 675 WP_005714023.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  J1G47_RS01075 (J1G47_01075) - 202741..204195 (-) 1455 WP_075605845.1 aminoacyl-histidine dipeptidase -
  J1G47_RS01080 (J1G47_01080) gpt 204376..204855 (+) 480 WP_160403664.1 xanthine phosphoribosyltransferase -
  J1G47_RS01085 (J1G47_01085) gmk 204982..205608 (+) 627 WP_010787010.1 guanylate kinase -
  J1G47_RS01090 (J1G47_01090) radA/sms 205661..207037 (-) 1377 WP_160403706.1 DNA repair protein RadA Machinery gene
  J1G47_RS01095 (J1G47_01095) pilA 207225..207677 (+) 453 WP_010787008.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  J1G47_RS01100 (J1G47_01100) - 207950..208315 (+) 366 WP_015940027.1 endonuclease domain-containing protein -
  J1G47_RS01105 (J1G47_01105) pilB 208668..210053 (+) 1386 WP_010787006.1 GspE/PulE family protein Machinery gene
  J1G47_RS01110 (J1G47_01110) pilC 210046..211242 (+) 1197 WP_005711777.1 type II secretion system F family protein Machinery gene
  J1G47_RS01115 (J1G47_01115) - 211239..211907 (+) 669 WP_010787005.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49578.23 Da        Isoelectric Point: 7.6964

>NTDB_id=477140 J1G47_RS01090 WP_160403706.1 205661..207037(-) (radA/sms) [Glaesserella parasuis strain YHP1818]
MAKAPKTAYVCSDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSDIDLQEVPRFSSVFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSVPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEATKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=477140 J1G47_RS01090 WP_160403706.1 205661..207037(-) (radA/sms) [Glaesserella parasuis strain YHP1818]
ATGGCAAAAGCACCAAAAACCGCTTATGTATGTAGTGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAATGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTTCGACTAATTTCGGCAAAAGAGAGCAAAAGTGACCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGATTGTCTGACATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGTTTTTTAT
GAACTAGACCGTGTGCTGGGGGGCGGTATTGTACCCGGCAGTGCGATTTTGATCGGCGGACACCCAGGGGCAGGGAAAAG
CACCTTGCTCTTGCAAGTGATGTGCGGTTTGTCGCAAAGTGTGCCAACCCTTTATGTGACTGGAGAAGAGTCGTTACAAC
AGGTGGCAATGCGAGCTAACCGTTTGGGCTTGCCGACTGATAATCTGAAAATGTTATCTGAAACTTCGGTCGAACATATT
TGTAATCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTGATGCACCTTTCGGATATTCAATC
TTCCCCAGGCAGTGTGGCTCAAGTGCGTGAATGTGCGGCGTTTTTGACACGTTATGCCAAAACACGTCAAGTGGCGATTA
TTATGGTCGGCCACGTTACGAAAGATGGAACTTTAGCAGGCCCTAAAGTGCTAGAACACGCCATTGACGCTTCGCTGTTA
TTGGAAGGGGAGGCGGACTCTCGTTATCGTACCTTACGCAGCCAGAAAAACCGTTTTGGTGCAGTGAACGAACTGGGTGT
ATTTGCAATGACAGAGCAGGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTTTTAAGTCGCAGTGAAGAACAGACTT
CAGGCAGCTCGGTGATGGTATTGTGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAGGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGTTTATCGCTGTTACTTGCGGTGTTACATCGACACGG
TGGCTTGCAAATGTCTGATCAAGATGTGTTTGTGAATGTGGTCGGTGGGGTAAAAGTCACGGAAACCAGTGCCGACCTAG
CTTTATTGCTGGCATTAATTTCGAGCTTTCGCAACCGTCCTTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATCCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCAACAAAACACGGCTTTAAACGCGCGATCAT
TCCTCACGGCAACGCTCCGAAAAAAGCAATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)

AAA domain (AAA_25)

(85-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.371

98.908

0.439
  radA Streptococcus mitis SK321

44.15

98.908

0.437
  radA Streptococcus pneumoniae Rx1

45.455

93.668

0.426
  radA Streptococcus pneumoniae D39

45.455

93.668

0.426
  radA Streptococcus pneumoniae R6

45.455

93.668

0.426
  radA Streptococcus pneumoniae TIGR4

45.455

93.668

0.426