Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H7795_RS01425 Genome accession   NZ_CP060641
Coordinates   264156..265658 (+) Length   500 a.a.
NCBI ID   WP_115255813.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain TSPY210     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 259156..270658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7795_RS01410 (H7795_01400) - 259209..260390 (-) 1182 WP_002986013.1 D-alanyl-D-alanine carboxypeptidase family protein -
  H7795_RS01415 (H7795_01405) pbp3 260558..261790 (-) 1233 WP_023079326.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  H7795_RS01420 (H7795_01410) amiA 262121..264091 (+) 1971 WP_023612875.1 peptide ABC transporter substrate-binding protein Regulator
  H7795_RS01425 (H7795_01415) amiC 264156..265658 (+) 1503 WP_115255813.1 ABC transporter permease Regulator
  H7795_RS01430 (H7795_01420) amiD 265658..266584 (+) 927 WP_002986004.1 oligopeptide ABC transporter permease OppC Regulator
  H7795_RS01435 (H7795_01425) amiE 266593..267663 (+) 1071 WP_002992231.1 ABC transporter ATP-binding protein Regulator
  H7795_RS01440 (H7795_01430) amiF 267656..268579 (+) 924 WP_002986000.1 ABC transporter ATP-binding protein Regulator
  H7795_RS09270 (H7795_01435) - 268617..268700 (-) 84 Protein_235 IS3 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 56138.54 Da        Isoelectric Point: 10.2794

>NTDB_id=477081 H7795_RS01425 WP_115255813.1 264156..265658(+) (amiC) [Streptococcus pyogenes strain TSPY210]
MKKYILNRIMRSLVSVVLVTALTYTIVYTLVPTSLIFKQDPNYNKMTTTPDKKVAYENLTFQRMGYVNYFSSKELKDNAS
KVDSSVTTEATSANKAIYKKYIDSLGNGWQLKRFPTSKQFYAIRNISIYERVWNFFSNLVVIDHPWKIQDKDNPKLARYI
RLEKDKSVGWSLVGSGTKHKYLLYTNGKFPYLHQNFVTLNLGTSYPTYSNIPVLQVISQGQGRTALQDVTFPSGVTKKSS
VDIYSRSYKNPKSLDDITKVNYGKGDSYTKTINNYVDPSMIHNSFVIGFFGVMFSYIVGLPLGLFMARFKNTYFDRFSTA
TMTFMLALPSIAVIYVVRFLGGMVGLPDSFPMLGASDPKSYILPALILGILNIPTTVIWFRRYLVDLQASDWVRFARSKG
LSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFAFPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLG
DIVMTLVDPRIKLSTKKGGK

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=477081 H7795_RS01425 WP_115255813.1 264156..265658(+) (amiC) [Streptococcus pyogenes strain TSPY210]
ATGAAAAAATACATTTTAAACCGTATCATGCGATCGTTAGTGTCGGTAGTTTTGGTAACGGCTTTAACATACACCATCGT
ATATACTCTAGTACCTACCAGCCTTATCTTTAAACAAGACCCTAATTATAATAAAATGACAACAACACCAGATAAAAAAG
TAGCGTATGAAAATCTAACTTTTCAACGTATGGGTTATGTCAATTATTTTTCAAGCAAAGAATTAAAAGATAATGCTTCT
AAAGTAGATAGTAGTGTAACGACAGAAGCAACTAGTGCTAACAAAGCTATCTATAAGAAGTATATTGATTCTCTTGGCAA
TGGCTGGCAGCTAAAACGCTTCCCCACTAGCAAACAGTTTTATGCAATTCGCAATATTTCTATTTACGAACGTGTTTGGA
ACTTTTTCTCAAATCTAGTTGTTATTGATCACCCTTGGAAGATTCAGGATAAAGATAATCCAAAATTAGCTAGGTATATT
CGTCTAGAAAAAGATAAATCAGTTGGCTGGTCACTTGTTGGTTCGGGGACAAAACATAAATATCTCCTCTATACTAACGG
AAAATTTCCTTATCTTCACCAAAACTTTGTTACCCTAAACTTAGGAACATCTTATCCAACATACAGCAATATTCCTGTTC
TTCAGGTTATTTCACAAGGGCAAGGACGAACAGCTCTTCAAGATGTGACCTTCCCATCAGGTGTCACTAAGAAATCGTCA
GTGGATATCTATAGCCGTAGCTACAAAAATCCAAAATCATTGGATGATATCACCAAGGTAAACTATGGTAAGGGAGATTC
CTACACTAAAACCATCAATAATTATGTCGACCCATCAATGATTCACAATTCTTTTGTAATTGGTTTTTTTGGTGTTATGT
TTTCCTATATCGTTGGTTTGCCTCTTGGTTTATTTATGGCTCGGTTTAAAAATACCTATTTTGACCGTTTCTCAACAGCG
ACCATGACCTTCATGCTTGCTTTACCAAGTATTGCTGTTATCTATGTTGTTCGCTTCCTAGGTGGCATGGTTGGTTTACC
AGATAGTTTCCCAATGCTGGGGGCATCTGATCCTAAATCTTATATTTTACCAGCCCTTATTTTAGGAATTTTAAATATTC
CAACTACGGTTATCTGGTTCCGTCGCTATCTTGTTGACCTTCAGGCCAGTGATTGGGTACGTTTTGCGCGTTCAAAAGGA
TTATCAGAATCTGAAATTTACAGAGGGCATCTCTTCAAAAATGCCATGGTCCCAATTGTGTCAGGGGTTCCTGCAAGTAT
TATCCTTGCTATTGGTGGTGCAACCTTAACAGAGACTGTCTTTGCCTTCCCGGGTATGGGTAAAATGTTAATTGATTCTA
TTAAATCTGCTAACAATTCTATGATTGTTGGATTAACCTTTATCTTCACTGTCTTGTCAATTGTTTCACTTTTACTAGGA
GATATTGTCATGACCCTTGTCGATCCACGTATTAAATTGTCAACAAAAAAAGGAGGTAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

59.4

100

0.594
  amiC Streptococcus thermophilus LMD-9

59

100

0.59
  amiC Streptococcus thermophilus LMG 18311

59

100

0.59